USGS - science for a changing world

Toxic Substances Hydrology Program

_
Bibliography
_

Surface-Water Contaminant Transport

Research on the transport and fate of contaminants in surface water

Sort by Author Sort by Year Sorted by Title Sort by Publication Type Only On-Line Reports Search the Toxics Program Bibliography Go to Contents of the Toxics Program Bibliography

< | A | B | C | D | E | F | G | H | I | K
L | M | N | O | P | Q | R | S | T | U | W

<

Boyer, E.W., Hornberger, G.M., Bencala, K.E., and McKnight, D.M., 1997,
Response characteristics of DOC flushing in an alpine catchment: Hydrological Processes, v. 11, no. 12, p. 1635-1647, doi:10.1002/(SICI)1099-1085(19971015)11:12<1635::AID-HYP494>3.0.CO;2-H.
Rostad, C.E., Rees, T.F., and Daniel, S.R., 1998,
Colloid particle sizes in the Mississippi River and some of its tributaries from Minneapolis to below New Orleans: Hydrological Processes, v. 12, no. 1, p. 25-41, doi:10.1002/(SICI)1099-1085(199801)12:1<25::AID-HYP544>3.0.CO;2-T.
Bencala, K.E., 2000,
Invited Commentary--Hyporheic zone hydrological processes: Hydrological Processes, v. 14, no. 15, p. 2797-2798, doi:10.1002/1099-1085(20001030)14:15<2797::AID-HYP402>3.0.CO;2-6.
Boyer, E.W., Hornberger, G.M., Bencala, K.E., and McKnight, D.M., 2000,
Effects of asynchronous snowmelt on flushing of dissolved organic carbon--A mixing model approach: Hydrological Processes, v. 14, no. 18, p. 3291-3308, doi:10.1002/1099-1085(20001230)14:18<3291::AID-HYP202>3.0.CO;2-2.

A

Barber, L.B., Keefe, S.H., Antweiler, R.C., Taylor, H.E., and Wass, R.D., 2006,
Accumulation of contaminants in fish from wastewater treatment wetlands: Environmental Science and Technology, v. 40, no. 2, p. 603-611, doi:10.1021/es0514287.
Triska, F.J., Jackman, A.P., Duff, J.H., and Avanzino, R.J., 1994,
Ammonium sorption to channel and riparian sediments--A transient storage pool for dissolved inorganic nitrogen: Biogeochemistry, v. 26, p. 67-83.
Runkel, R.L., McKnight, D.M., and Andrews, E.D., 1998,
Analysis of transient storage subject to unsteady flow--Diel flow variation in an Antarctic stream: Journal of North American Benthological Society, v. 17, no. 2, p. 143-154.
Aga, D.S., 1995,
Analytical applications of immunoassays in environmental and agricultural chemistry--study of the fate and transport of herbicides: Lawrence, University of Kansas, Department of Chemistry, Ph.D. thesis, 220 p.
Brooks, P.D., McKnight, D.M., and Bencala, K.E., 2001,
Annual maxima in zinc concentrations during spring snowmelt in streams impacted by mine drainage: Environmental Geology, v. 40, no. 11-12, p. 1447-1454, doi:10.1007/s002540100338.
Battaglin, W.A., Goolsby, D.A., and Coupe, R., 1993,
Annual use and transport of agricultural chemicals in the Mississippi River, 1991-92, in Goolsby, D.A., Boyer, L.L., and Mallard, G.E., eds., Selected papers on agricultural chemicals in water resources of the Midcontinental United States: U.S. Geological Survey Open-File Report 93-418, p. 26-40.
Battaglin, W.A., Goolsby, D.A., and Coupe, R.H., 1996,
Annual use and transport of agricultural chemicals in the Mississippi River, 1991-92, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 429-440.
Walton-Day, K., Runkel, R.L., Kimball, B.A., and Bencala, K.E., 1999,
Application of the solute-transport models OTIS and OTEQ and implications for remediation in a watershed affected by acid mine drainage, Cement Creek, Animas River Basin, Colorado, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 37-46.
Walton-Day, K., Runkel, R.L., Kimball, B.A., and Bencala, K.E., 2000,
Application of the solute-transport models OTIS and OTEQ and implications for remediation in a watershed affected by acid mine drainage, Cement Creek, Animas River basin, Colorado, in Proceedings from the Fifth International Conference on Acid Rock Drainage, Denver, Colorado, May 21-24, 2000: Littleton, Colo., Society for Mining, Metallurgy, and Exploration, p. 389-399.
Verplanck, P.L., Taylor, H.E., Nordstrom, D.K., and Barber, L.B., 2005,
Aqueous stability of gadolinium in surface waters receiving sewage treatment plant effluent, Boulder Creek, Colorado: Environmental Science and Technology, v. 39, no. 18, p. 6923-6929, doi:10.1021/es048456u.
Nordstrom, D.K., Wright, W.G., Mast, M.A., Bove, D.J., and Rye, R.O., 2007,
Aqueous-sulfate stable isotopes--A study of mining-affected and undisturbed acidic drainage (Chapter E8), in Church, S.E., von Guerard, P.B., and Finger, S.E., eds., Integrated Investigations of Environmental Effects of Historical Mining in the Animas River Watershed, San Juan County, Colorado: U.S. Geological Survey Professional Paper 1651, v. 1, p. 387-416.
Kimball, B.A., Runkel, R.L., Walton-Day, K., and Bencala, K.E., 2002,
Assessment of metal loads in watersheds affected by acid mine drainage by using tracer injection and synoptic sampling--Cement Creek, Colorado, USA: Applied Geochemistry, v. 17, no. 9, p. 1183-1207, doi:10.1016/S0883-2927(02)00017-3.
Walton-Day, K., Healy, R.W., and Smith, B., 2006,
Assessment of remediation of fluvial tailings deposits in the upper Arkansas River Basin, Lake County, Colorado: U.S. Geological Survey Administrative Report, 97 p.
Lawrence, G.B., Goolsby, D.A., Battaglin, W.A., and Stensland, G.J., 2000,
Atmospheric nitrogen in the Mississippi River Basin--emissions, deposition and transport: The Science of the Total Environment, v. 248, no. 2-3, p. 87-99, doi:10.1016/S0048-9697(99)00533-1.
Thurman, E.M., and Cromwell, A.E., 2000,
Atmospheric transport, deposition, and fate of triazine herbicides and their metabolites in pristine areas at Isle Royale National Park: Environmental Science and Technology, v. 34, no. 15, p. 3079-3085, doi:10.1021/es000995l.
Cromwell, A.E., and Thurman, E.M., 1996,
Atrazine transport and degradation in a pristine watershed--The fate of atrazine deposited by precipitation, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 423-428.
Scott, D.T., Gooseff, M.N., Bencala, K.E., and Runke., R.L., 2003,
Automated calibration of a stream solute transport model--Implications for interpretation of biogeochemical parameters: Journal of the North American Benthological Society, v. 22, no. 4, p. 492-510.

B

Hostettler, F.D., Rapp, J.B., Kvenvolden, K.A., and Luoma, S.N., 1988,
Biogenic and anthropogenic organic markers as source discriminants and sediment transport indicators in South San Francisco Bay: U.S. Geological Survey Open-File Report 88-408, 28 p.
Parker, S.R., Poulson, S.R., Gammons, C.H., and DeGrandpre, M.D., 2005,
Biogeochemical controls on diel cycling of stable isotopes of dissolved 02 and dissolved inorganic carbon in the Big Hole River, Montana: Environmental Science and Technology, v. 39, no. 18, p. 7134-7140, doi:10.1021/es0505595.
Triska, F.J., 2006,
Biogeochemical processes in river systems--Part 1--Key biochemical processes in river systems, in Shiklomanov, I.A., ed., Encyclopedia of Water Sciences, Engineering and Technology Resources, in Encyclopedia of Life Support Systems: EOLSS Publishers Ltd.
Thompson, B., Adelsbach, T., Brown, C., Hunt, J., Kuwabara, J., Neale, J., Ohlendorf, H., Schwarzbach, S., Spies, R., and Taberski, K., 2007,
Biological effects of anthropogenic contaminants in the San Francisco Estuary: Environmental Research, v. 105, no. 1, p. 156-174, doi:10.1016/j.envres.2006.10.005.
Bradley, P.M., Barber, L.B., Kolpin, D.W., McMahon, P.B., and Chapelle, F.H., 2007,
Biotransformation of caffeine, cotinine, and nicotine in stream sediments--Implications for use as wastewater indicators: Environmental Toxicology and Chemistry, v. 26, no. 6, p. 1116-1121, doi:10.1897/06-483R.1.
Landmeyer, J.E., Tanner, T.L., and Watt, B.E., 2004,
Biotransformation of tributyltin to tin in freshwater river-bed sediments contaminated by an organotin release: Environmental Science and Technology, v. 38, no. 15, p. 4106-4112, doi:10.1021/es030697z.

C

McClain, M.E., Bilby, R.E., and Triska, F.J., 1998,
Chapter 14 - Biogeochemical cycles of nitrogen, phosphorus, and sulfur--Natural distributions and response to disturbance, in Naiman, R.J., ed., The Ecology and Management of Rivers and Streams in the Pacific Northwest Ecoregion: New York, Springer-Verlag, p. 347-372.
Pringle, C.M., and Triska, F.J., 1996,
Chapter 29 - Effects of nutrient enrichment on periphyton, in Hayer, F.R., and Lamberti, G.A., eds., Methods in Stream Ecology: San Diego, Academic Press, p. 607-624.
Croué, J.-P., Benedetti, M.F., Violleau, D., and Leenheer, J.A., 2003,
Characterization and copper binding of humic and nonhumic organic matter isolated from the South Platte River--Evidence for the presence of nitrogenous binding site: Environmental Science and Technology, v. 37, no. 2, p. 328-336, doi:10.1021/es020676p.
Rees, T.F., and Ranville, J.F., 1989,
Characterization of colloids in the Mississippi River and its major tributaries, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 513-522.
Reddy, M.M., Schuster, P., Kendall, C., and Reddy, M.B., 2006,
Characterization of surface and ground-water ?18O seasonal variation and its use for estimating groundwater residence times: Hydrological Processes, v. 20, no. 8, p. 1753-1772, doi:10.1002/hyp.5953.
Choi, J., Harvey, J.W., and Conklin, M.H., 2000,
Characterizing multiple timescales of stream and storage zone interaction that affect solute fate and transport in streams: Water Resources Research, v. 36, no. 6, p. 1511-1518, 2000WR900051, doi:10.1029/2000WR900051.
Van Metre, P.C., Wilson, J.T., Horowitz, A.J., Skrobialowski, S.C., Foreman, W.T., Fuller, C.C., Burkhardt, M.R., Elrick, K.A., Mahler, B.J., Smith, J.J., and Zaugg, S.D., 2007,
Chemical constituents in sediment in Lake Pontchartrain and in street mud and canal sediment in New Orleans, Louisiana, following Hurricanes Katrina and Rita, 2005: U.S. Geological Survey Data Series 206, 159 p.
Barber, L.B., Murphy, S.F., Verplanck, P.L., Sandstrom, M.W., Taylor, H.E., and Furlong, E.T., 2006,
Chemical loading into surface water along a hydrological, biogeochemical, and land use gradient--A holistic watershed approach: Environmental Science and Technology, v. 40, no. 2, p. 475-486, doi:10.1021/es051270q.
McKnight, D.M., and Bencala, K.E., 1990,
The chemistry of iron, aluminum, and dissolved organic material in three acidic, metal-enriched, mountain streams, as controlled by watershed and in-stream processes: Water Resources Research, v. 26, no. 12, p. 3087-3100, 90WR01510, doi:10.1029/WR026i012p03087.
Thurman, E.M., Mills, M.S., and Meyer, M.T., 1996,
Chemistry, degradation, and transport of triazine herbicide metabolites in surface water, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 455-462.
Schemel, L.E., Kimball, B.A., and Bencala, K.E., 2000,
Colloid formation and metal transport through two mixing zones affected by acid mine drainage near Silverton, Colorado: Applied Geochemistry, v. 15, no. 7, p. 1003-1018.
Schemel, L.E., Kimball, B.A., and Bencala, K.E., 1999,
Colloid formation and the transport of aluminum and iron in the Animas River near Silverton, Colorado, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 59-62.
Meyer, M.T., Scribner, E.A., and Kalkhoff, S.J., 2007,
Comparison of fate and transport of isoxaflutole to atrazine and metolachlor in 10 Iowa rivers: Environmental Science and Technology, v. 41, no. 20, p. 6933-6939, doi:10.1021/es070903t.
Constantz, J., Cox, M.H., and Su, G.W., 2003,
Comparison of heat and bromide as ground-water tracers near streams: Ground Water, v. 41, no. 5, p. 647-656, doi:10.1111/j.1745-6584.2003.tb02403.x.
Kimball, B.A., Broshears, R.E., Bencala, K.E., and McKnight, D.M., 1991,
Comparison of rates of hydrologic and chemical processes in a stream affected by acid mine drainage, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 407-412.
Jamieson, H.E., Robinson, C., Alpers, C.N., Nordstrom, D.K., Poustovetov, A., and Lowers, H.A., 2005,
The composition of coexisting jarosite-group minerals and water from the Richmond mine, Iron Mountain, California: Canadian Mineralogist, v. 43, no. 4, p. 1225-1242.
Brinton, T.I., Garbarino, J.R., Peart, D.B., Taylor, H.E., and Antweiler, R.C., 1995,
Concentration and transport data for dissolved inorganic constituents in water collected during seven cruises on the Mississippi River and some of its tributaries, July 1987 - June 1990: U.S. Geological Survey Open-File Report 94-524, 102 p.
Garbarino, J.R., Antweiler, R.C., Brinton, T.I., Roth, D.A., and Taylor, H.E., 1995,
Concentration and transport data for selected dissolved inorganic constituents and dissolved organic carbon in water collected from the Mississippi River and some of its tributaries, July 1991 - May 1992: U.S. Geological Survey Open-File Report 95-149, 149 p.
Rostad, C.E., 1997,
Concentration and transport of chlordane and nonachlor associated with suspended sediment in the Mississippi River, May 1998 to June 1990: Archives of Environmental Contamination and Toxicology, v. 33, no. 4, p. 369-377, doi:10.1007/s002449900266.
Kelly, T., and Taylor, H.E., 1996,
Concentrations and loads of selected trace elements and other constituents in the Rio Grande, in the vicinity of Albuquerque, New Mexico, 1994: U.S. Geological Survey Open-File Report 96-126, 45 p.
Pereira, W.E., Moody, J.A., Hostettler, F.D., Rostad, C.E., and Leiker, T.J., 1995,
Concentrations and mass transport of pesticides and organic contaminants in the Mississippi River and some of its tributaries, 1987-89: U.S. Geological Survey Open-File Report 94-376, 169 p.
Farag, A.M., Nimick, D.A., Kimball, B.A., Church, S.E., Harper, D.D., and Brumbaugh, W.G., 2007,
Concentrations of metals in water, sediment, biofilm, benthic macroinvertebrates, and fish in the Boulder River Watershed, Montana, and the role of colloids in metal uptake: Archives of Environmental Contamination and Toxicology, v. 52, no. 3, p. 397-409, doi:10.1007/s00244-005-0021-z.
Kuivila, K.M., and Foe, C.G., 1995,
Concentrations, transport, and biological effects of dormant spray pesticides in the San Francisco Estuary, California: Environmental Toxicology and Chemistry, v. 14, no. 7, p. 1141-1150.
Stream Solute Workshop, 1990,
Concepts and methods for assessing solute dynamics in stream ecosystems: Journal of the North American Benthological Society, v. 9, p. 95-119.
Keefe, S.H., Barber, L.B., Runkel, R.L., Ryan, J.N., McKnight, D.M., and Wass, R.K., 2004,
Conservative and reactive solute transport in constructed wetlands: Water Resources Research, v. 40, no. 1, W01201, doi:10.1029/2003WR002130.
Breault, R.F., Colman, J.A., Aiken, G.R., and McKnight, D.M., 1996,
Copper speciation and binding by organic matter in copper-contaminated streamwater: Environmental Science and Technology, v. 30, no. 12, p. 3477-3486, doi:10.1021/es9601301.
Kuwabara, J.S., Leland, H.V., and Bencala, K.E., 1984,
Copper transport along a Sierra Nevada stream: Journal of Environmental Engineering, v. 110, p. 646-655.
Kimball, B.A., Broshears, R.E., Bencala, K.E., and McKnight, D.M., 1994,
Coupling of hydrologic transport and chemical reactions in a stream affected by acid mine drainage: Environmental Science and Technology, v. 28, no. 12, p. 2065-73, doi:10.1021/es00061a014.
Meyer, M.T., Thurman, E.M., and Goolsby, D.A., 1996,
Cyanazine, atrazine, and their metabolites as geochemical indicators of contaminant transport in the Mississippi River, in Meyer, M.T., and Thurman, E.M., eds., Herbicide metabolites in surface water and groundwater: Washington, D.C., American Chemical Society ACS Symposium Series 630, p. 288-303.

D

Rostad, C.E., Bishop, L.M., Pereira, W.E., and Leiker, T.J., 2004,
Data for selected organic contaminants in the Mississippi and Ohio Rivers near their confluence, June 1989 and May-June 1990: U.S. Geological Survey Open-File Report 93-371 (An alternative title for this numbered report is listed at http://pubs.usgs.gov/of/1993/ofr93-371/ ), 18 p.
Flint, M.R., Bencala, K.E., Zellweger, G.W., and Hammermeister, D.P., 1985,
Data from a solute transport experiment in the Leviathan Mine drainage, Alpine County, Calif., October 1982: U.S. Geological Survey Open-File Report 85-85, 107 p.
Leenheer, J.A., Noyes, T.I., and Brown, P.A., 1995,
Data on natural organic substances in dissolved, colloidal, suspended-silt and clay, and bed-sediment phases in the Mississippi River and some of its tributaries, 1987-4204: U.S. Geological Survey Water-Resources Investigations Report 93-4204, 71 p.
Leenheer, J.A., Barber, L.B., Rostad, C.E., and Noyes, T.I., 1995,
Data on natural organic substances in dissolved, colloidal, suspended-silt, and -clay and bed-sediment phases in the Mississippi River and some of its tributaries, 1991-92: U.S. Geological Survey Water-Resources Investigations Report 94-4191, 47 p.
Striegl, R.G., Aiken, G.R., Dornblaser, M.M., Raymond, P.A., and Wickland, K.P., 2005,
A decrease in discharge-normalized DOC export by the Yukon River during summer through autumn: Geophysical Research Letters, v. 32, L21413, doi:10.1029/2005GL024413.
Starner, K., Kuivila, K.M., Jennings, B.M., and Moon, G.E., 1999,
Degradation rates of six pesticides in water from the Sacramento River, California, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 2 of 3--Contamination of Hydrologic Systems and Related Ecosystems: U.S. Geological Survey Water-Resources Investigations Report 99-4018B, p. 89-97.
Gooseff, M.N., McKnight, D.M., Runkel, R.L., and Duff, J.H., 2004,
Denitrification and hydrologic transient storage in a glacial meltwater stream, McMurdo Dry Valleys, Antarctica: Limnology and Oceanography, v. 49, no. 5, p. 1884-1895.
McMahon, P.B., and Böhlke, J.K., 1996,
Denitrification and mixing in a stream--aquifer system--Effects on nitrate loading to surface water: Journal of Hydrology, v. 186, no. 1-4, p. 105-128, doi:10.1016/S0022-1694(96)03037-5.
Schemel, L.E., and Cox, M.H., 2005,
Descriptions of the Animas River-Cement Creek confluence and mixing zone near Silverton, Colorado, during the late summers of 1996 and 1997: U.S. Geological Survey Open-File Report 2005-1064, 4 p (Online only).
Duff, J.H., Toner, B., Jackman, A.P., and Triska, F.J., 2000,
Determination of groundwater discharge into a sand and gravel bottom river--A preliminary comparison of chloride dilution and seepage meter techniques: Internationale Vereinigung fur Theoretische und Angewandte Limnologie, v. 27, p. 1-6.
Ortiz, R.F., and Bencala, K.E., 2001,
Determination of instream metal loads using tracer-injection and synoptic-sampling techniques in Wightman Fork, southwestern Colorado, September 1997: U.S. Geological Survey Water-Resources Investigations Report 00-4154, 26 p.
Buszka, P.M., Barber, L.B., II, Schroeder, M.P., and Becker, L.D., 1994,
Determination of organic compounds downstream from a treated-wastewater discharge near Dallas, Texas, March 1987: U.S. Geological Survey Water-Resources Investigations Report 93-4194, 19 p.
Gooseff, M.N., McKnight, D.M., Runkel, R.L., and Vaughn, B.H., 2003,
Determining long time-scale hyporheic zone flow paths in Antarctic streams: Hydrological Processes, v. 17, no. 9, p. 1691-1710, doi:10.1002/hyp.1210.
Fallon, J.D., 1994,
Determining the 3-dimensional distribution, transport, and relative age of atrazine and selected metabolites in Perry Lake, Kansas: Lawrence, University of Kansas, Department of Civil Engineering, M.S. thesis, 176 p.
Fallon, J.D., and Thurman, E.M., 1996,
Determining the relative age, transport, and three-dimensional distribution of atrazine in a reservoir using immunoassay, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 499-504.
Broshears, R.E., Runkel, R.L., and Kimball, B.A., 1994,
Development and application of a reactive solute transport model for trace metals in mountain streams, in Dutton, A.R., ed., Toxic Substances and the Hydrologic Sciences--Proceedings of the conference, Austin, Texas, April 10-13, 1994: Minneapolis, Minn., American Institute of Hydrology, p. 19-34.
Runkel, R.L., 1993,
Development and application of an equilibrium-based simulation model for reactive solute transport in small streams: Boulder, University of Colorado, unpublished Ph.D. dissertation, 202 p.
Brown, D.W., and Hem, J.D., 1984,
Development of a model to predict the adsorption of lead from solution on a natural streambed sediment: U.S. Geological Survey Water-Supply Paper 2187, 35 p.
Kuivila, K.M., and Copeland, D.D., 1996,
Diazinon concentrations and transport in the Sacramento River and San Francisco Bay, California, February 1993, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 699-704.
Gammons, C.H., Grant, T.M., Nimick, D.A., Parker, S.R., and DeGrandpre, M.D., 2007,
Diel changes in water chemistry in an arsenic-rich stream and treatment-pond system: Science of the Total Environment, v. 384, no. 1-3, p. 433-451, doi:10.1016/j.scitotenv.2007.06.029.
Chapin, T.P., Nimick, D.A., Gammons, C.H., and Wanty, R.B., 2007,
Diel cycling of zinc in a stream impacted by acid rock drainage--Initial results from a new in situ Zn analyzer: Environmental Monitoring and Assessment, v. 133, no. 1-3, p. 161-167, doi:10.1007/s10661-006-9569-y.
Nimick, D.A., McCleskey, R.B., Gammons, C.H., and Parker, S.R., 2007,
Diel mercury concentration cycles in streams affected by mining and geothermal discharge: Science of the Total Environment, v. 373, no. 1, p. 344-355, doi:10.1016/j.scitotenv.2006.11.008.
Parker, S.R., Gammons, C.H., Poulson, S.R., and DeGrandpre, M.D., 2007,
Diel variations in stream chemistry and isotopic composition of dissolved inorganic carbon, upper Clark Fork River, Montana, USA: Applied Geochemistry, v. 22, no. 7, p. 1329-1343, doi:10.1016/j.apgeochem.2007.02.007.
McKnight, D.M., Bencala, K.E., Harnish, R.A., and Runkel, R.L., 1996,
Difficulties with intermediate-scale experiments for studies of iron chemistry in streams affected by acidic mine drainage, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 789-796.
Triska, F.J., Pringle, C.M., Zellweger, G.W., Duff, J.H., and Avanzino, R.J., 1993,
Dissolved inorganic nitrogen composition, transformation, retention, and transport in naturally phosphate-rich and phosphate-poor tropical streams: Canadian Journal of Fisheries and Aquatic Sciences, v. 50, p. 665-675.
Fuller, C.C., Davis, J.A., Cain, D.J., Lamothe, P.J., Fries, T.L., Fernandez, G., Vargas, J.A., and Murillo, M.M., 1990,
Distribution and transport of sediment-bound metal contaminants in the Rio Grande de Tarcoles, Costa Rica (Central America): Water Research, v. 24, p. 805-812.
Rostad, C.E., Pereira, W.E., and Keiker, T.J., 1999,
Distribution and transport of selected anthropogenic liipophilic organic compounds associated with Mississippi River suspended sediment, 1989-1990: Archives of Environmental Contamination and Toxicology, v. 36, no. 3, p. 248-255, doi:10.1007/s002449900468.
Rostad, C.E., Pereira, W.E., and Leiker, T.J., 1994,
Distribution and transport of selected anthropogenic organic compounds on Mississippi River suspended sediment (U.S.A.), May/June 1988: Journal of Contaminant Hydrology, v. 16, p. 175-199, doi:10.1016/0169-7722(94)90051-5.
Rostad, C.E., and Daniel, S.R., 2007,
Distribution of selected halogenated organic compounds among suspended particulate, colloid, and aqueous phases in the Mississippi River and major tributaries: Archives of Environmental Contamination and Toxicology, v. 53, no. 2, p. 151-158, doi:10.1007/s00244-005-0056-1.
Morris, J.M., Nimick, D.A., Farag, A.M., and Meyer, J.S., 2005,
Does biofilm contribute to diel cycling of Zn in High Ore Creek, Montana?: Biogeochemistry, v. 76, no. 2, p. 233-259, doi:10.1007/s10533-005-4774-2.

E

Harvey, J.W., and Fuller, C.C., 1998,
Effect of enhanced manganese oxidation in the hyporheic zone on basin-scale geochemical mass balance: Water Resources Research, v. 34, no. 4, p. 623-636, 97WR03606, doi:10.1029/97WR03606.
Kimball, B.A., McKnight, D.M., Broshears, R.E., and Bencala, K.E., 1992,
Effect of instream pH modification on aluminum, in Kharaka, Y.K., and Maest, A.S., eds., Low temperature environments, v. 1 of Water-rock interaction--Proceedings of the 7th International Symposium on Water-Rock Interaction--WRI-7, Park City Utah, July 13-18, 1992: Rotterdam, A.A. Balkema, p. 393-396.
Harvey, J.W., and Bencala, K.E., 1993,
The effect of streambed topography on surface-subsurface water exchange in mountain catchments: Water Resources Research, v. 29, no. 1, p. 89-98, 92WR01960, doi:10.1029/92WR01960.
Liszewski, M.J., and Squillace, P.J., 1991,
The effect of surface-water and ground-water exchange on the transport and storage of atrazine in the Cedar River, Iowa, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 195-202.
Fuller, C.C., and Harvey, J.W., 1999,
The effect of trace-metal reactive uptake in the hyporheic zone on reach-scale metal transport in Pinal Creek, Arizona, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 163-172.
Van Metre, P.C., Horowitz, A.J., Mahler, B.J., Foreman, W.T., Fuller, C.C., Burkhardt, M.R., Elrick, K.A., Furlong, E.T., Skrobialowski, S.C., Smith, J.J., Wilson, J.T., and Zaugg, S.D., 2006,
Effects of Hurricanes Katrina and Rita on the chemistry of bottom sediments in Lake Pontchartrain, Louisiana, USA: Environmental Science and Technology, v. 40, no. 22, p. 6894-6902, doi:10.1021/es060933g.
Church, S.E., Owen, J.R., von Guerard, P., Verplanck, P.L., Kimball, B.A., and Yager, D.B., 2007,
The effects of acidic mine drainage from historical mines in the Animas River watershed, San Juan County, Colorado--What is being done and what can be done to improve water quality?, in DeGraff, J.V., ed., Understanding and responding to hazardous substances at mine sites in the western United States: Boulder, Colo., Geological Society of America, p. 47-83, ISBN:9780813741178.
Kuwabara, J.S., Chang, C.C.Y., and Pasilis, S.P., 1988,
Effects of algal growth on arsenic transport in Whitewood Creek, South Dakota--Preliminary results, in Mallard, G.E., ed., U.S. Geological Survey Toxic Substances Hydrology Program--Surface-Water Contamination--Proceedings of the technical meeting, Denver, Colorado, February 2-4, 1987: U.S. Geological Survey Open-File Report 87-764, p. 33-38.
Kuwabara, J.S., Chang, C.C.Y., and Pasilis, S.P., 2004,
Effects of benthic fauna on arsenic transport in Whitewood Creek, South Dakota, in Kuwabara, J.S., and Fuller, C.C., eds., Toxic Substances in Surface Waters and Sediments--A Study to Assess the Effects of Arsenic-Contaminated Alluvial Sediment in Whitewood Creek, South Dakota: U.S. Geological Survey Professional Paper 1681, p. 1-26.
Kuwabara, J.S., Chang, C.C.Y., and Pasilis, S.P., 1990,
Effects of benthic flora on arsenic transport: Journal of Environmental Engineering, v. 116, p. 394-409.
Kimball, B.A., and Church, S.E., 1997,
Effects of colloidal iron and aluminum on the transport and transformation of metals in rivers affected by mine drainage, in Proceedings of the U.S. Geological Survey (USGS) Sediment Workshop, "Expanding Sediment Research Capabilities in Today's USGS", Reston, VA, and Harpers Ferry, WV, February 4-7, 1997: U.S. Geological Survey.
Kimball, B.A., Callender, E., and Axtmann, E.V., 1995,
Effects of colloids on metal transport in a river receiving acid mine drainage, Upper Arkansas River, Colorado, U.S.A.: Applied Geochemistry, v. 10, no. 3, p. 285-306, doi:10.1016/0883-2927(95)00011-8.
Kimball, B.A., Broshears, R.E., McKnight, D.M., and Bencala, K.E., 1994,
Effects of instream pH modification on transport of sulfide-oxidation products, in Alpers, C.N., and Blowes, D.W., eds., Environmental chemistry of sulfide oxidation: Washington, D.C., American Chemical Society ACS Symposium Series 550, p. 224-243.
Wright, W.G., Kimball, B.A., and Runkel, R.L., 2007,
Effects of the May Day Mine site on stream-water quality in the Cement Creek Basin, August 2000, in Church, S.E., von Guerard, P., and Finger, S.E., eds., Integrated Investigations of Environmental Effects of Historical Mining in the Animas River Watershed, San Juan County, Colorado: U.S. Geological Survey Professional Paper 1651, v. 2, p. 943-972.
Runkel, R.L., and Chapra, S., 1993,
An efficient numerical solution of the transient storage equations for solute transport in small streams: Water Resources Research, v. 29, no. 1, p. 211-215, 92WR02217, doi:10.1029/92WR02217.
Pringle, C.M., and Triska, F.J., 2000,
Emergent biological patterns in streams resulting from surface-subsurface interactions at landscape scales, in Jones, J.B., and Mulholland, P.J., eds., Streams and Groundwaters: New York, Academic Press.
Harvey, J.W., Fuller, C.C., and Conklin, M.H., 1999,
Enhanced removal of dissolved manganese in hyporheic zones--Centimeter-scale causes and kilometer-scale consequences, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 193-199.
Alpers, C.N., Stewart, A.R., Saiki, M.K., Marvin-DiPasquale, M., Topping, B.R., Rider, K.M., Gallanthine, S.K., Kester, C.A., Rye, R.O., Antweiler, R.C., and DeWild, J.F., 2007,
Environmental factors affecting mercury in Camp Far West Reservoir, 2001--03: U.S. Geological Survey Scientific Investigations Report 2006-5008.
Runkel, R.L., Bencala, K.E., and Broshears, R.E., 1996,
An equilibrium-based simulation model for reactive solute transport in small streams, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 775-780.
Runkel, R.L., and Kimball, B.A., 2002,
Evaluating remedial alternatives for an acid mine drainage stream--Application of a reactive transport model: Environmental Science and Technology, v. 36, no. 5, p. 1093-1101, doi:10.1021/es0109794.
Ball, J.W., Runkel, R.L., and Nordstrom, D.K., 2004,
Evaluating remedial alternatives for the Alamosa River and Wightman Fork, near Summitville Mine, Colorado--Application of a reactive transport model to low- and high-flow simulations, in Zannetti, P., ed., Environmental Sciences and Environmental Computing: The EnviroComp Institute, v. II, p. 1-54.
Wagner, B.J., and Harvey, J.W., 1999,
Evaluating the ability of tracer tests to quantify reactive solute transport in stream-aquifer systems, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 201-209.
Harvey, J.W., Wagner, B.J., and Bencala, K.E., 1996,
Evaluating the reliability of the stream tracer approach to characterize stream-subsurface water exchange: Water Resources Research, v. 32, no. 8, p. 2441-51, 96WR01268, doi:10.1029/96WR01268.
Ellis, G.S., Huckins, J.N., Rostad, C.E., Schmitt, C.J., Petty, J.D., and MacCarthy, P., 1995,
Evaluation of lipid-containing semipermeable membrane devices for monitoring organochlorine contaminants in the Upper Mississippi River: Environmental Toxicology and Chemistry, v. 14, no. 11, p. 1875-1884.
Zellweger, G.W., Bencala, K.E., Kimball, B.A., and McKnight, D.M., 1989,
Evaluation of lithium, sodium, chloride, and sulfate as tracers to investigate hydrologic aspects of acidic, metal-rich streams, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 609.
Kimball, B.A., Runkel, R.L., Walton-Day, K., and Stover, B.K., 2006,
Evaluation of metal loading to streams near Creede, Colorado, August and September 2000: U.S. Geological Survey Scientific Investigations Report 2004-5143, 64 p.
Kimball, B.A., Runkel, R.L., and Walton-Day, K., 2004,
Evaluation of remediation alternatives in streams affected by acidic, metal-rich drainage, in Wanty, R.B., and Seal III, R.R., eds., Proceedings of the Eleventh International Symposium on Water-Rock Interaction WRI-II, Saratoga Springs, New York, June 27-July 2, 2004: A.A. Balkema, p. 1551-1555.
Cox, M.H., Mendez, G.O., Kratzer, C.R., and Reichard, E.G., 2003,
Evaluation of tracer tests completed in 1999 and 2000 on the upper Santa Clara River, Los Angeles and Ventura Counties, California: U.S. Geological Survey Water-Resources Investigations Report 2003-4277, 99 p.
Bencala, K.E., Triska, F.J., Kennedy, V.C., Zellweger, G.W., Duff, J.H., and Avanzino, R.J., 1989,
Exchange between stream and substream flows--Implications for pollutant transport and nutrient cycling through a forested watershed, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 610.
Rosenberry, D.O., Dean, W.E., Duff, J.H., LaBaugh, J.W., Reddy, M.M., Schuster, P.S., Striegl, R.G., Triska, F.J., and Winter, T.C., 2003,
Exchange of water, solutes, and nutrients at the sediment-water interface affects a northern Minnesota watershed at multiple scales, in Proceedings of the First Interagency Conference on Research in the Watersheds, Benson, Arizona, October 27-30, 2003: U.S. Department of Agriculture, Agricultural Research Service, p. 468-473.
Meade, R.H., and Leenheer, J.A., 1995,
Executive summary, in Meade, R.H., ed., Contaminants in the Mississippi River, 1987-1992: U.S. Geological Survey Circular 1133, p. 1-10.
Niyogi, D.K., McKnight, D.M., Lewis, W.M., Jr, and Kimball, B.A., 1999,
Experimental diversion of acid mine drainage and the effects on a headwater stream, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 123-130.
Morris, J.M., and Meyer, J.S., 2006,
Extracellular and intracellular uptake of zinc in a photosynthetic biofilm matrix: Bulletin of Environmental Contamination and Toxicology, v. 77, no. 1, p. 30-35, doi:10.1007/s00128-006-1028-5.

F

Demas, C.R., and Demcheck, D.K., 1989,
Fate and transport of organic compounds and trace elements in the lower Calcasieu River, Louisiana, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Ariz., September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 271-281.
Demas, C.R., 1988,
Fate and transport of organic compounds in the lower Calcasieu River, Louisiana, in U.S. Geological Survey Yearbook, Fiscal Year 1987, p. 83-89.
Tabor, C.F., and Barber, L.B., 1996,
Fate of linear alkylbenzene sulfonate in the Mississippi River: Environmental Science and Technology, v. 30, no. 1, p. 161-171, doi:10.1021/es950210p.
Keefe, S.H., Barber, L.B., Runkel, R.L., and Ryan, J.N., 2004,
Fate of volatile organic compounds in constructed wastewater treatment wetlands: Environmental Science and Technology, v. 38, no. 7, p. 2209-2216, doi:10.1021/es034661i.
Hulseapple, S.M., 1995,
A field study of reareation and solute transport at Pinal Creek, Globe, Arizona: Tucson, University of Arizona, M.S. thesis, 94 p.
Cheng, R.T., Gartner, J.W., Cacchione, D.A., and Tate, G.B., 1998,
Flow and suspended particulate transport in a tidal boundary layer, South San Francisco Bay, California, in Dronkers, J., and Scheffers, M., eds., Physics of Estuaries and Coastal Seas: Rotterdam, Balkema, p. 3-12.
Nuttle, W.K., and Harvey, J.W., 1995,
Fluxes of water and solute in a coastal wetland sediment 1. The contribution of regional groundwater discharge: Journal of Hydrology, v. 164, no. 1-4, p. 89-107, doi:10.1016/0022-1694(94)02561-O.
Harvey, J.W., and Nuttle, W.K., 1995,
Fluxes of water and solute in a coastal wetland sediment 2. Effect of macropores on solute exchange with surface water: Journal of Hydrology, v. 164, no. 1-4, p. 109-125, doi:10.1016/0022-1694(94)02562-P.
Thurman, E.M., Meyer, M.T., Mills, M.S., Zimmerman, L.R., Perry, C.A., and Goolsby, D.A., 1994,
Formation and transport of deethylatrazine and deisopropylatrazine in surface water: Environmental Science and Technology, v. 28, no. 13, p. 2267-2277, doi:10.1021/es00062a010.
Schemel, L.E., Kimball, B.A., Runkel, R.L., and Cox, M.H., 2007,
Formation of mixed Al-Fe colloidal sorbent and dissolved-colloidal partitioning of Cu and Zn in the Cement Creek-Animas River confluence, Silverton, Colorado: Applied Geochemistry, v. 22, no. 7, p. 1467-1484, doi:10.1016/j.apgeochem.2007.02.010.
Kuwabara, J.S., Topping, B.R., Woods, P.F., and Carter, J.L., 2007,
Free zinc ion and dissolved orthophosphate effects on phytoplankton from Coeur d'Alene Lake, Idaho: Environmental Science and Technology, v. 41, no. 8, p. 2811-2817, doi:10.1021/es062923l.
Paulson, A.J., Konrad, C.P., Frans, L.M., Noble, M.A., Kendall, c., Josberger, E.G., Huffman, R.L., and Olsen, T.D., 2006,
Freshwater and saline loads of dissolved inorganic nitrogen to Hood Canal and Lynch Cove, western Washington: U.S. Geological Survey Scientific Investigations Report 2006-5106, 91 p.
Rostad, C.E., 1997,
From the 1998 drought to the 1993 flood--Transport of halogenated organic compounds with the Mississippi River suspended sediment at Thebes, Illinois: Environmental Science and Technology, v. 31, p. 1308-1312, doi:10.1021/es960513z.

G

Kimball, B.A., Bencala, K.E., and Broshears, R.E., 1994,
Geochemical processes in the context of hydrologic transport, in Dutton, A.R., ed., Toxic Substances and the Hydrologic Sciences--Proceedings of the conference, Austin, Texas, April 10-13, 1994: Minneapolis, Minn., American Institute of Hydrology, p. 80-94.
Runkel, R.L., Kimball, B.A., Walton-Day, K., and Verplanck, P.L., 2005,
Geochemistry of Red Mountain Creek, Colorado, under low-flow conditions, August 2002: U.S. Geological Survey Scientific Investigations Report 2005-5101, 78 p.
Piper, D.Z., Ludington, S., Duval, J.S., and Taylor, H.E., 2006,
Geochemistry of bed and suspended sediment in the Mississippi river system--Provenance versus weathering and winnowing: Science of the Total Environment, v. 362, no. 1-3, p. 179-204, doi:10.1016/j.scitotenv.2005.05.041.
Meyer, M.T., 1994,
Geochemistry of cyanazine and its metabolites--Indicators of contaminant transport in surface water of the midwestern United States: Lawrence, University of Kansas, Department of Geology, Ph.D. thesis, 364 p.
Kimball, B.A., Bencala, K.E., McKnight, D.M., and Maura, W.S., 1988,
Geochemistry of dissolved metals in St. Kevin Gulch, an acidic mountain stream near Leadville, Colorado, in Mallard, G.E., ed., U.S. Geological Survey Toxic Substances Hydrology Program--Surface-Water Contamination--Proceedings of the technical meeting, Denver, Colorado, February 2-4, 1987: U.S. Geological Survey Open-File Report 87-764, p. 137-144.
Hunerlach, M.P., Alpers, C.N., Marvin-DiPasquale, M., Taylor, H.E., and De Wilde, J.F., 2004,
Geochemistry of mercury and other trace elements in fluvial tailings upstream of Gaguerre Point Dam, Yuba River, California, August 2001: U.S. Geological Survey Scientific Investigations Report 2004-5165, 77 p.
Nordstrom, D.K., Alpers, C.N., Coston, J.A., Taylor, H.E., McCleskey, R.B., Ball, J.W., Ogle, S.A., Cotsifas, J.S., and Davis, J.A., 1999,
Geochemistry, toxicity, and sorption properties of contaminated sediments and pore waters from two reservoirs receiving acid mine drainage, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 289-296.
Smith, J.D., Lambing, J.H., Nimick, D.A., Parret, C., Ramey, M., and Schafer, W., 1998,
Geomorphology, flood-plain tailings, and metal transport in the Upper Clark Fork Valley, Montana: U.S. Geological Survey Water-Resources Investigations Report 98-4170, 56 p.
Harvey, J.W., Krupa, S.L., and Krest, J.M., 2004,
Ground water recharge and discharge in the central Everglades: Ground Water, v. 42, no. 7, p. 1090-1102, doi:10.1111/j.1745-6584.2004.tb02646.x.
Böhlke, J.K., O'Connell, M.E., and Prestegaard, K.L., 2007,
Ground water stratification and delivery of nitrate to an incised stream under varying flow conditions: Journal of Environmental Quality, v. 36, no. 3, p. 664-680, doi:10.2134/jeq2006.0084.

H

Constantz, J., and Stonestrom, D.A., 2003,
Heat as a tracer of water movement near streams, in Stonestrom, D.A., and Constantz, J., eds., Heat as a tool for studying the movement of ground water near streams: U.S. Geological Survey Circular 1260, p. 1-6.
Constantz, J., Jasperse, J., Seymour, D., and Su, G.W., 2003,
Heat tracing in the streambed along the Russian River of northern California, in Stonestrom, D.A., and Constantz, J., eds., Heat as a tool for studying the movement of ground water near streams: U.S. Geological Survey Circular 1260, p. 17-20.
Garbarino, J.R., Hayes, H.C., Roth, D.A., Antweiler, R.C., Brinton, T.I., and Taylor, H.E., 1995,
Heavy metals in the Mississippi River, in Meade, R.H., ed., Contaminants in the Mississippi River, 1987-92: U.S. Geological Survey Circular 1133, p. 52-71.
Squillace, P.J., and Thurman, E.M., 1992,
Herbicide transport in rivers--Importance of hydrology and geochemistry in nonpoint-source contamination: Environmental Science and Technology, v. 26, no. 3, p. 538-545, doi:10.1021/es00027a015.
Squillace, P.J., and Thurman, E.M., 1989,
Herbicide transport in the Cedar River, Iowa--Importance of hydrology and geochemistry in nonpoint-source contamination, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 635.
Goolsby, D.A., Thurman, E.M., Pomes, M.L., Meyer, M.T., and Battaglin, W.A., 1997,
Herbicides and their metabolites in rainfall--Origin, transport, and deposition patterns across the midwestern and northeastern United States, 1990-1991: Environmental Science and Technology, v. 31, no. 5, p. 1325-1333, doi:10.1021/es960847o.
Triska, F.J., Duff, J.H., Warren, E., Godsy, E.M., Jackman, A.P., and Avanzino, R.J., 2006,
High and low flow nitrate distribution and its implications for nitrate retention in Navigation Pool 8, Upper Mississippi River (UMR), and in a high nitrate tributary, the Root River, USA, in Jones, J., ed., XXIX Congress of the International Association of Theoretical and Applied Limnology, Lahti, Finland, August 8-14, 2004: Verhandlungen Internationale Vereinigung für Theoretische und Angewandte Limnologie, v. 29, no. 4, p. 1,729-1,735, ISBN:978-3-510-54068-6.
Van Metre, P.C., Callender, E., and Fuller, C.C., 1997,
Historical trends in organochloride compounds in river basins identified using sediment cores from reservoirs: Environmental Science and Technology, v. 31, no. 8, p. 2339-2344, doi:10.1021/es960943p.
McKnight, D.M., Wershaw, R.L., Bencala, K.E., Zellweger, G.W., and Feder, G.L., 1992,
Humic substances and trace metals associated with Fe and Al oxides deposited in an acidic mountain stream: The Science of the Total Environment, v. 117/118, p. 485-498, doi:10.1016/0048-9697(92)90113-7.
Oltmann, R.N., 1996,
Hydrodynamics of California's Sacramento-San Joaquin Delta, and the collection of flow data for the tracking of pesticides, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 695-698.
McMahon, P.B., Tindall, J.A., Collins, J.A., Lull, K.J., and Nuttle, J.R., 1995,
Hydrologic and geochemical effects on oxygen uptake in bottom sediments of an effluent-dominated river: Water Resources Research, v. 31, p. 2561-2569.
Jackman, A.P., Triska, F.J., and Duff, J.H., 1997,
Hydrologic examination of ground water discharge into the upper Shingobee River, in Winter, T.C., ed., Interdisciplinary Research Initiative--Hydrological and biogeochemical research in the Shingobee River headquarters area, north-central Minnesota: U.S. Geological Survey Water-Resources Investigations Report 96-4215, p. 137-142.
Boyer, E.W., Hornberger, G.W., and Bencala, K.E., 1993,
Hydrological controls on the temporal variation of dissolved organic carbon in Deer Creek near Montezuma, Colorado, in McAleer, M., and Jakeman, A., eds., Proceedings of the 10th Biennial Conference of the Modeling and Simulation Society of Australia, December 6-10, 1993: The University of Western Australia, p. 501-506.
Boyer, E.W., 1994,
Hydrology and the variation of dissolved organic carbon in soil and stream waters of two headwater catchments--Summit County, Colorado: Charlottesville, University of Virginia, Master of Science Thesis, Environmental Science, 102 p.
Bencala, K.E., 2005,
Hyporheic exchange flows, in Anderson, M.G., and McDonnell, J.J., eds., Encyclopedia of Hydrological Sciences: New Jersey, John Wiley and Sons, v. 3, Chapter 113, p. 1733-1740.
Schindler, J.E., and Krabbenhoft, D.P., 1998,
The hyporheic zone as a source of dissolved organic carbon and carbon gases to a temperate forested stream: Biogeochemistry, v. 43, no. 2, p. 157-174, doi:10.1023/A:1006005311257.

I

Rees, T.F., and Ranville, J.F., 1988,
Identification of colloids present at Sheeler Seeps, Whitewood Creek, South Dakota, in Mallard, G.E., ed., U.S. Geological Survey Toxic Substances Hydrology Program--Surface-Water Contamination--Proceedings of the technical meeting, Denver, Colorado, February 2-4, 1987: U.S. Geological Survey Open-File Report 87-764, p. 29-32.
Barber, L.B., and Writer, J.H., 1998,
Impact of the 1993 flood on the distribution of organic contaminants in bed sediments of the Upper Mississippi River: Environmental Science and Technology, v. 32, no. 14, p. 2077-2083, doi:10.1021/es970795i.
Kolpin, D.W., 2000,
Importance of the Mississippi River Basin for investigating agricultural--chemical contamination of the hydrologic cycle: The Science of the Total Environment, v. 248, no. 2-3, p. 71-72, doi:10.1016/S0048-9697(99)00530-6.
McKnight, D.M., Hornberger, G.M., Bencala, K.E., and Boyer, E.W., 2002,
In-stream sorption of fulvic acid in an acidic stream--A stream-scale transport experiment: Water Resources Research, v. 38, no. 1, p. 6-1 - 6-12, doi:10.1029/2001WR000269.
Niswonger, R.G., Prudic, D.E., Pohll, G., and Constantz, J., 2005,
Incorporating seepage losses into the unsteady streamflow equations for simulating intermittent flow along mountain front streams: Water Resources Research, v. 41, W06006, doi:10.1029/2004WR003677.
Walvoord, M.A., and Striegl, R.G., 2007,
Increased groundwater to stream discharge from permafrost thawing in the Yukon River basin--Potential impacts on lateral export of carbon and nitrogen: Geophysical Research Letters, v. 34, no. 12, L12402, doi:10.1029/2007GL030216.
Gammons, C.H., Milodragovich, L., and Belanger-Woods, J., 2007,
Influence of diurnal cycles on metal concentrations and loads in streams draining abandoned mine lands--An example from High Ore Creek, Montana: Environmental Geology, v. 53, no. 3, p. 611-622, doi:10.1007/s00254-007-0676-z.
Shope, C.L., Xie, Y., and Gammons, C.H., 2006,
The influence of hydrous Mn-Zn oxides on diel cycling of Zn in an alkaline stream draining abandoned mine lands: Applied Geochemistry, v. 21, no. 3, p. 476-491, doi:10.1016/j.apgeochem.2005.11.004.
Nimick, D.A., Harper, D.D., Farag, A.M., Cleasby, T.E., Macconnell, E., and Skaar, D., 2007,
Influence of in-stream diel concentration cycles of dissolved trace metals on acute toxicity to one-year-old cutthroat trout (Oncorhynchus clarki lewisi): Environmental Toxicology and Chemistry, v. 26, no. 12, p. 2667-2678, doi:10.1897/07-265.
Cain, D.J., Buchwalter, D.B., and Luoma, S.N., 2006,
Influence of metal exposure history on the bioaccumulation and subcellular distribution of aqueous cadmium in the insect Hydropsyche californica: Environmental Toxicology and Chemistry, v. 25, no. 4, p. 1042-1049, doi:10.1897/05-255R.1.
Duff, J.H., Triska, F.J., Jackman, A.P., and LaBaugh, J.W., 1997,
The influence of stream bed sediments on the solute chemistry of the upper Shingobee River, in Winter, T.C., ed., Interdisciplinary Research Initiative--Hydrological and biogeochemical research in the Shingobee river headquarters area, north-central Minnesota: U.S. Geological Survey Water-Resources Investigations Report 96-4215, p. 143-148.
McKnight, D.M., Runkel, R.L., Tate, C.M., Duff, J.H., and Moorhead, D.L., 2004,
Inorganic N and P dynamics of Antarctic glacial meltwater streams as controlled by hyporheic exchange and benthic autotrophic communities: Journal of the North American Benthological Society, v. 23, no. 2, p. 171-188.
Sheibley, R.W., Duff, J.H., Jackman, A.P., and Triska, F.J., 2003,
Inorganic nitrogen transformations in the bed of the Shingobee River, Minnesota--Integrating hydrologic and biological processes using sediment perfusion cores: Limnology and Oceanography, v. 48, no. 3, p. 1129-1140.
Kuivila, K.M., and Jennings, B.E., 2007,
Input, flux, and persistence of six select pesticides in San Francisco Bay: International Journal of Environmental Analytical Chemistry, v. 87, no. 13, p. 897-911, doi:10.1080/03067310701619014.
Kimball, B.A., and Wetherbee, G.A., 1989,
Instream chemical reactions of acid mine water entering a neutral stream near Leadville, Colorado, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 71-79.
Harvey, J.W., Fuller, C.C., and Wagner, B.J., 1996,
Interactions between shallow ground water and surface water that affect metal transport in Pinal Creek, Arizona, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 1065-1072.
Bencala, K.E., 1984,
Interactions of solutes and streambed sediment--2. A dynamic analysis of coupled hydrologic and chemical processes that determine solute transport: Water Resources Research, v. 20, no. 12, p. 1804-1814, 4W1201, doi:10.1029/WR020i012p01804.
Bencala, K.E., Kennedy, V.C., Zellweger, G.W., Jackman, A.P., and Avanzino, R.J., 1984,
Interactions of solutes and streambed sediments--1. An experimental analysis of cation and anion transport in a mountain stream: Water Resources Research, v. 20, no. 12, p. 1797-1803, 4W1200, doi:10.1029/WR020i012p01797.
Broshears, R.E., Kimball, B.A., and Runkel, R.L., 1995,
Interpreting spatial profiles of concentration in acid mine drainage streams, in Hotchkiss, W.R., Downey, J.S., Gutentag, E.D., and Moore, J.E., eds., Water resources at risk, Denver, Colo.: Minneapolis, Minnesota, American Institute of Hydrology, p. LL-10-21.
Hunt, R.J., Coplen, T.B., Haas, N.L., Saad, D.A., and Borchardt, M.A., 2005,
Investigating surface water-well interaction using stable isotope ratios of water: Journal of Hydrology, v. 302, no. 1-4, p. 154-172, doi:10.1016/j.jhydrol.2004.07.010.
McKnight, D.M., Kimball, B.A., and Bencala, K.E., 1988,
Iron photoreduction and oxidation in an acidic mountain stream: Science, v. 240, p. 637-640.
Borrok, D.M., Nimick, D.A., Wanty, R.B., and Ridley, W.I., 2008,
Isotopic variation of dissolved copper and zinc in stream waters affected by historical mining: Geochimica et Cosmochimica Acta, v. 72, no. 2, p. 329-344, doi:10.1016/j.gca.2007.11.014.
McDonald, E.T., and Cheng, R.T., 1994,
Issues related to modeling the transport of suspended sediments in northern San Francisco Bay, California, in The proceedings of the Third International Conference on Estuarine and Coastal Modeling: Chicago, Illinois, American Society of Civil Engineers, p. 551-564.

K

Bencala, K.E., Jackman, A.P., Kennedy, V.C., Avanzino, R.J., and Zellweger, G.W., 1983,
Kinetic analysis of strontium and potassium sorption onto sands and gravels in a natural channel: Water Resources Research, v. 19, no. 3, p. 725-731, doi:10.1029/WR019i003p00725.

L

Pringle, C.M., Rowe, C.L., Triska, F.J., Fernandez, J.F., and West, J., 1993,
Landscape linkages between geothermal activity, solute composition, and ecological response in surface waters draining the Atlantic slope of Costa Rica: Limnology and Oceanography, v. 38, p. 753-774.
Morris, J.M., Farag, A.M., Nimick, D.A., and Meyer, J.S., 2006,
Light-mediated Zn uptake in photosynthetic biofilm: Hydrobiologia, v. 571, p. 361-371, doi:10.1007/s10750-006-0261-6.
Hinkle, S.R., Duff, J.H., Triska, F.J., Laenen, A., Gates, E.B., Bencala, K.E., Wentz, D.A., and Silva, S.R., 2001,
Linking hyporheic flow and nitrogen cycling near the Willamette River - a large river in Oregon, USA: Journal of Hydrology, v. 244, no. 3-4, p. 157-180, doi:10.1016/S0022-1694(01)00335-3.
Triska, F.J., Kennedy, V.C., Avanzino, R.J., and Stanley, K.C., 1995,
Long-term effects of clearcutting and short-term impacts of storms on inorganic nitrogen uptake and regeneration in a small stream at summer base flow, in Nolan, K.M., Kelsey, H.M., and Marron, D.C., eds., Geomorphic processes and aquatic habitat in the Redwood Creek Basin, northwestern California: U.S. Geological Survey Professional Paper 1454, p. V1-V13.
Avanzino, R.J., and Kennedy, V.C., 1993,
Long-term frozen storage of streamwater samples for dissolved orthophosphate, nitrate plus nitrate, and ammonia analysis: Water Resources Research, v. 29, no. 10, p. 3357-3362.

M

Smith, J.A., Witkowski, P.J., and Fusillo, T.V., 1987,
Manmade organic compounds in the surface waters of the United States--A review of current understanding: U.S. Geological Survey Circular 1007, 92 p.
Presser, T.S., and Piper, D.Z., 1997,
Mass balance approach to selenium cycling through the San Joaquin Valley, sources to river to bay, in Frankenberger, W., and Engberg, R.A., eds., Environmental Chemistry of Selenium: New York, Marcel Dekker Inc.
Walton-Day, K., Flynn, J.L., Kimball, B.A., and Runkel, R.L., 2005,
Mass loading of selected major and trace elements in Lake Fork Creek near Leadville, Colorado, September-October 2001: U.S. Geological Survey Scientific Investigations Report 2005-5151, 46 p.
Harvey, J.W., 1993,
Measurement of variation in soil-solute tracer concentration across a range of effective pore sizes: Water Resources Research, v. 29, p. 1831-1837, 93WR00529, doi:10.1029/93WR00529.
Kimball, B.A., McKnight, D.M., Wetherbee, G.A., and Harnish, R.A., 1992,
Mechanisms of iron photoreduction in a metal-rich, acidic stream (St. Kevin Gulch, Colorado, USA): Chemical Geology, v. 96, no. 1-2, p. 227-239, doi:10.1016/0009-2541(92)90130-W.
Schuster, P., Shanley, J., Marvin-Dipasquale, M., Reddy, M., Aiken, G., Roth, D., Taylor, H., Krabbenhoft, D., and DeWild, J., 2008,
Mercury and organic carbon dynamics during runoff episodes from a northeastern USA watershed: Water, Air, and Soil Pollution, v. 187, no. 1, p. 89-108, doi:10.1007/s11270-007-9500-3.
Elder, J.F., 1988,
Metal biogeochemistry in surface-water systems--A review of principles and concepts: U.S. Geological Survey Circular 1013, 43 p.
Cain, D.J., Carter, J.L., Fend, S.V., Luoma, S.N., Alpers, C.N., and Taylor, H.E., 2000,
Metal exposure to a benthic invertebrate, Hydropsyche californica, in the Sacramento River downstream of Keswick Reservoir, California: Canadian Journal of Fisheries, v. 57, p. 380-390.
Kimball, B.A., and McKnight, D.M., 1989,
Metal partitioning and photoreduction of iron in filtrates of acid streamwater, St. Kevin Gulch, Leadville, Colorado, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 93-100.
Alpers, C.N., Taylor, H.E., and Domagalski, J.J., 2000,
Metals transport in the Sacramento River, California, 1996-97--Volume 1. Methods and data: U.S. Geological Survey Water-Resources Investigations Report 99-4286, 428 p.
Alpers, C.N., Antweiler, R.C., Taylor, H.E., Dileanis, P.D., and Domagalski, J.J., 2000,
Metals transport in the Sacramento River, California, 1996-97--Volume 2. Interpretation of metal loads: U.S. Geological Survey Water-Resources Investigations Report 00-4002, 106 p.
Duff, J.H., Murphy, F., Fuller, C.C., Triska, F.J., Harvey, J.W., and Jackman, A.P., 1998,
A mini drive point sampler for measuring pore water solute concentrations in the hyporheic zone of sand-bottom streams: Limnology and Oceanography, v. 43, no. 6, p. 1378-1383.
Kim, B.E., Jackman, A.P., and Triska, F.J., 1992,
Modeling biotic uptake by periphyton and transient hyporrheic storage on nitrate in a natural stream: Water Resources Research, v. 28, no. 10, p. 2743-2752.
Runkel, R.L., McKnight, D.M., and Rajaram, H., 2003,
Modeling hyporheic zone processes: Advances in Water Resources, v. 26, no. 9, p. 901-905, doi:10.1016/S0309-1708(03)00079-4.
Chapra, S.C., and Runkel, R.L., 1999,
Modeling impact of storage zones on stream dissolved oxygen: Journal of Environmental Engineering, v. 125, no. 5, p. 415-419.
Runkel, R.L., Bencala, K.E., and Kimball, B.A., 1999,
Modeling solute transport and geochemistry in streams and rivers using OTIS and OTEQ, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 109-118.
Packman, A.I., and Bencala, K.E., 2000,
Modeling surface - subsurface hydrologic interactions, in Jones, J.B., and Mulholland, P.J., eds., Streams and Ground Waters: Academic Press, p. 45-80.
Bencala, K.E., Duff, J.H., Harvey, J.W., Jackman, A.P., and Triska, F.J., 1993,
Modelling within the stream-catchment continuum, in Jakeman, A.J., Beck, M.B., and McAleer, J.J., eds., Modelling Change in Environmental Systems: Wiley, p. 163-187.
Bencala, K.E., McKnight, D.M., Zellweger, G.W., and Kimball, B.A., 1988,
Monitoring acidic streams for transport studies, in Mallard, G.E., ed., U.S. Geological Survey Toxic Substances Hydrology Program--Surface-Water Contamination--Proceedings of the technical meeting, Denver, Colorado, February 2-4, 1987: U.S. Geological Survey Open-File Report 87-764, p. 119-124.
Smith, K.S., Ranville, J.F., Macalady, D.L., and Rees, T.F., 1988,
Monodisperse colloids from an acid-mine-drainage impacted stream, in Preprints of Papers Presented at the Third Chemical Congress of North America and 195th ACS National Meeting, Division of Environmental Chemistry, Toronto, Ontario, June 5-10, 1988: Washington, D.C., American Chemical Society, v. 28, no. 1, p. 527-529.
Schemel, L.E., Cox, M.H., Runkel, R.L., and Kimball, B.A., 2006,
Multiple injected and natural conservative tracers quantify mixing in a stream confluence affected by acid mine drainage near Silverton, Colorado: Hydrological Processes, v. 20, no. 13, p. 2727-2743, doi:10.1002/hyp.6081.

N

Gartner, J.W., and Cheng, R.T., 1996,
Near bottom velocity measurements in San Francisco Bay, California, in Proceedings, Oceans 96 MTS/IEEE Conference, Ft. Lauderdale, Fla., September 23-26, 1996: Marine Technology Society/Institute of Electrical and Electronic Engineers, p. 457-462.
Runkel, R.L., 2002,
A new metric for determining the importance of transient storage: Journal of the North American Benthological Society, v. 21, no. 4, p. 529-543.
Warren, E., Godsy, E.M., Duff, J.H., Triska, F.J., and Jackman, A.P., 2006,
Nitrate reduction and microbial numbers in upper Mississippi River sediments, Pool 8, La Crosse, Wisconsin, USA: Verhandlungen Internationale Vereinigung fur Theoretische und Angewandte Limnologie, v. 29, p. 1578-1582.
Sheibley, R.W., Duff, J.H., Jackman, A.P., Triska, F.J., Warren, E., and Godsy, E.M., 2006,
Nitrate reduction in sediment perfusion cores from Pool 8, upper Mississippi River, La Crosse, Wisconsin, USA: Internationale Vereinigung fur Theoretische und Angewandte Limnologie, v. 29, p. 1289-1295.
Duff, J.H., Pringle, C.M., and Triska, F.J., 1996,
Nitrate reduction in sediments of lowland tropical streams draining swamp forest in Costa Rica--An ecosystem perspective: Biogeochemistry, v. 33, p. 179-196.
Duff, J.H., and Triska, F.J., 2000,
Nitrogen biogeochemistry and surface-subsurface exchange in streams, in Jones, J.B., and Mulholland, P.J., eds., Streams and Groundwater: New York, Academic Press, p. 197-220.
Wankel, S.D., Kendall, C., Francis, C.A., and Paytan, A., 2006,
Nitrogen sources and cycling in the San Francisco Bay estuary--A nitrate dual isotopic composition approach: Limnology and Oceanography, v. 51, no. 4, p. 1654-1664 (Abstract).
Holloway, J.M., Smith, R.L., and Nordstrom, D.K., 2004,
Nitrogen transformations in hot spring runoff, Yellowstone National Park, USA, in Wanty, R.B., and Seal, R.R., II, eds., Water-Rock Interaction, Proceedings of the Eleventh International Symposium on Water - Rock Interaction, Saratoga Springs, New York, July 2004: A.A. Balkema, p. 145-148.
Sheibley, R.W., Jackman, A.P., Duff, J.H., and Triska, F.J., 2003,
Numerical modeling of coupled nitrification-denitrification in sediment perfusion cores from the hyporheic zone of the Shingobee River, Minnesota: Advances in Water Resources, v. 26, no. 9, p. 977-987, doi:10.1016/S0309-1708(03)00088-5.

O

Taylor, H.E., Antweiler, R.C., Roth, D.A., Brinton, T.I., Peart, D.B., and Healy, D.F., 2001,
The occurrence and distribution of selected trace elements in the upper Rio Grande and tributaries in Colorado and northern New Mexico: Archives of Environmental Contamination and Toxicology, v. 41, p. 410-426, doi:10.1007/s002440010267.
Tabor, C.F., 1993,
The occurrence and fate of linear alkylbenzene sulfonate in the Mississippi River--A molecular indicator of sewage contamination: Boulder, University of Colorado, Master's Thesis, 78 p.
Clark, G.M., and Goolsby, D.A., 1999,
Occurrence and transport of acetochlor in streams of the Mississippi River Basin: Journal of Environmental Quality, v. 28, no. 6, p. 1787-1795.
Baker, N.T., Stone, W.W., Wilson, J.T., and Meyer, M.T., 2006,
Occurrence and transport of agricultural chemicals in Leary Weber Ditch Basin, Hancock County, Indiana, 2003-04: U.S. Geological Survey Scientific Investigations Report 2006-5251, 44 p.
Goolsby, D.A., Battaglin, W.A., and Thurman, E.M., 1993,
Occurrence and transport of agricultural chemicals in the Mississippi River basin, July through August 1993--Floods in the Upper Mississippi River Basin, 1993: U.S. Geological Survey Circular 1120-C, 22 p.
Goolsby, D.A., Battaglin, W.A., and Thurman, E.M., 1994,
Occurrence and transport of herbicides and nitrate in the Mississippi River during the 1993 flood--Proceedings of American Water Resources Association meeting, in, Nashville, Tenn., April 17-20, 1994: p. 473-477.
Goolsby, D.A., and Battaglin, W.A., 1994,
Occurrence and transport of pesticides in the Mississippi River basin, in Proceedings of WATERSHED93--A National Conference on River Basin Planning, Alexandria, Va., March 24, 1993: p. 827.
Thurman, E.M., Goolsby, D.A., Aga, D.S., Pomes, M.L., and Meyer, M.T., 1996,
Occurrence of alachlor and its sulfonated metabolite in rivers and reservoirs of the midwestern U.S.--The importance of sulfonation in the transport of chloroacetanilide herbicides: Environmental Science and Technology, v. 30, no. 2, p. 569-574, doi:10.1021/es950341q.
Battaglin, W.A., Kuivila, K., Winton, K., and Meyer, M., 2008,
Occurrence of chlorothalonil, its transformation products, and selected other pesticides in Texas and Oklahoma streams, 2003-2004: U.S. Geological Survey Scientific Investigations Report 2008–5016, 9 p.
Reilly, T.J., Walker, C.E., Baehr, A.L., Schrock, R.M., and Reinfelder, J.R., 2005,
Occurrence of diatoms in lakeside wells in northern New Jersey as an indicator of the effect of surface water on ground-water quality: U.S. Geological Survey Scientific Investigations Report 2005-5263, 13 p.
Goolsby, D.A., Thurman, E.M., Pomes, M.L., Meyer, M., and Battaglin, W.A., 1993,
Occurrence, deposition, and long range transport of herbicides in precipitation in the Midwestern and Northeastern United States, in Goolsby, D.A., Boyer, L.L., and Mallard, G.E., eds., Selected papers on agricultural chemicals in water resources of the Midcontinental United States: U.S. Geological Survey Open-File Report 93-418, p. 75-89.
Goolsby, D.A., Thurman, E.M., Pomes, M.L., Meyer, M., and Battaglin, W.A., 1996,
Occurrence, deposition, and long range transport of herbicides in precipitation in the Midwestern and Northeastern United States, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 411-421.
Goolsby, D.A., and Battaglin, W.A., 1993,
Occurrence, distribution, and transport of agricultural chemicals in surface waters of the Midwestern United States, in Goolsby, D.A., Boyer, L.L., and Mallard, G.E., eds., Selected papers on agricultural chemicals in water resources of the Midcontinental United States: U.S. Geological Survey Open-File Report 93-418, p. 1-25.
Pereira, W.E., and Rostad, C.E., 1990,
Occurrence, distributions, and transport of herbicides and their degradation products in the lower Mississippi River and its tributaries: Environmental Science and Technology, v. 24, no. 9, p. 1400-1406, doi:10.1021/es00079a015.
Runkel, R.L., 1998,
One dimensional transport with inflow and storage (OTIS)--A solute transport model for streams and rivers: U.S. Geological Survey Water-Resources Investigations Report 98-4018, 73 p.
Runkel, R.L., and Broshears, R.L., 1992,
One-dimensional transport with inflow and storage (OTIS)--A solute transport model for small streams: Boulder, Colo., CADSWES, 1 p.
Rostad, C.E., Leenheer, J.A., and Daniel, S.R., 1997,
Organic carbon and nitrogen content associated with colloids and suspended particulates from the Mississippi River and some of its tributaries: Environmental Science and Technology, v. 31, no. 11, p. 3218-3225, doi:10.1021/es970196b.
Barber, L.B., II, Leenheer, J.A., Tabor, C.F., Brown, G.K., Noyes, T.I., and Noriega, M.C., 1995,
Organic compounds and sewage-derived compounds, in Moody, J.A., ed., Chemical data for water samples collected during four upriver cruises on the Mississippi River between New Orleans, Louisiana, and Minneapolis, Minnesota, May 1990-April 1992: U.S. Geological Survey Open-File Report 94-523, p. 211-297.
Rostad, C.E., Bishop, L.M., Ellis, G.E., Leiker, T.J., Monsterleet, S.G., and Pereira, W.E., 2004,
Organic contaminants associated with suspended sediment collected during five cruises of the Mississippi River and its principal tributaries, May 1988 to June 1990: U.S. Geological Survey Open-File Report 93-360, 54 p.
Barber, L.B., II, Leenheer, J.A., Pereira, W.E., Noyes, T.I., Brown, G.K., Tabor, C.F., and Writer, J.H., 1995,
Organic contamination of the Mississippi River from municipal and industrial wastewater, in Meade, R.H., ed., Contaminants in the Mississippi River, 1987-1992: U.S. Geological Survey Circular 1133, p. 115-135.
Hostettler, F.D., Rapp, J.B., Kvenvolden, K.A., and Luoma, S.N., 1989,
Organic markers as source discriminants and sediment transport indicators in South San Francisco Bay, California: Geochimica et Cosmochimica Acta, v. 53, p. 1563-1576.
Rostad, C.E., Sullivan, J.F., Hrinko, D.E., Bishop, L.M., and Moody, J.A., 1997,
Organochlorine compounds (Chapter 3), in Moody, J.A., ed., Hydrologic sedimentologic, and chemical data describing surficial bed sediments and water in the navigation pools of the Upper Mississippi River, July 1991-April 1992: U.S. Geological Survey Open-File Report 95-708, p. 73-108.
Boyer, E.W., Hornberger, G.M., Bencala, K.E., and McKnight, D.M., 1996,
Overview of a simple model describing variation of dissolved organic carbon in an upland catchment: Ecological Modeling, v. 86, p. 183-188, doi:10.1016/0304-3800(95)00049-6.

P

McKnight, D.M., Kimball, B.A., and Runkel, R.L., 2001,
pH dependence of iron photoreduction in a Rocky Mountain stream affected by acid mine drainage: Hydrological Processes, v. 15, no. 10, p. 1979-1992, doi:10.1002/hyp.251.
Smith, J.A., Witkowski, P.J., and Chiou, C.T., 1988,
Partition of nonionic organic compounds in aquatic systems: Reviews of Environmental Contamination and Toxicology, v. 39, p. 465-473.
Rostad, C.E., 1996,
Partitioning of lipophilic organic contaminants among suspended particulate, colloid, and dissolved phases in the Mississippi River: Golden, Colorado School of Mines, Ph.D. Thesis, 210 p.
Schemel, L.E., Cox, M.H., Kimball, B.A., and Bencala, K.E., 1999,
Partitioning of zinc between dissolved and colloidal phases in the Animas River near Silverton, Colorado, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 63-66.
Kimball, B.A., 1996,
Past and present research on metal transport in St. Kevin Gulch, Colorado, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 753-758.
Triska, F.J., Duff, J.H., and Avanzino, R.J., 1993,
Patterns of hydrological exchange and nutrient transformation in the hyporheic zone of a gravel bottom stream--Examining terrestrial aquatic linkages: Freshwater Biology, v. 29, p. 259-274.
Bencala, K.E., 1985,
Performance of sodium as a transport tracer experimental and simulation analysis, in Subitzky, S., ed., Selected Papers in the Hydrologic Sciences, 1985: U.S. Geological Survey Water-Supply Paper 2270, p. 83-89.
Kuwabara, J.S., Chang, C.C.Y., and Pasilis, S.P., 1989,
Periphyton effects on arsenic transport in Whitewood Creek, South Dakota, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 247-255.
Bergamaschi, B.A., Kuivila, K.M., and Fram, M.S., 2001,
Pesticides associated with suspended sediments entering San Francisco Bay following the first major storm of water year 1996: Estuaries, v. 24, no. 3, p. 368-380.
Piper, D.Z., Skorupa, J.P., Presser, T.S., Hardy, S.J., Hamilton, M.A., Huebner, M.A., and Gulbrandsen, R.A., 2000,
The Phosphoria Formation at the Hot Springs Mine in southeast Idaho--A source of trace elements to ground water, surface water, and biota: U.S. Geological Survey Open-File Report 00-050, 73 p.
McKnight, D.M., Kimball, B.A., and Bencala, K.E., 1988,
Photoreduction of hydrous iron oxides in acidic mountain streams in Colorado, in Mallard, G.E., ed., U.S. Geological Survey Toxic Substances Hydrology Program--Surface-Water Contamination--Proceedings of the technical meeting, Denver, Colorado, February 2-4, 1987: U.S. Geological Survey Open-File Report 87-764, p. 131-136.
Morris, J.M., and Meyer, J.S., 2007,
Photosynthetically mediated Zn removal from the water column in High Ore Creek, Montana: Water, Air, and Soil Pollution, v. 179, no. 1-4, p. 391-395, doi:10.1007/s11270-006-9232-9.
Triska, F.J., Duff, J.H., Avanzino, R.J., and Jackman, A.P., 1997,
Physical and chemical properties at the interface between a bank-side ground water seep and the channel of the Shingobee River, in Winter, T.C., ed., Interdisciplinary Research Initiative--Hydrological and biogeochemical research in the Shingobee River headquarters area, north-central Minnesota: U.S. Geological Survey Water-Resources Investigations Report 96-4215, p. 149-154.
Bencala, K.E., Duff, J.H., Harvey, J.W., Jackman, J.P., and Triska, F.J., 1993,
Physical transport influencing biogeochemistry within the stream catchment continuum, in Jakeman, A.J., Beck, M.B., and McAleer, M.J., eds., Modelling change in environmental systems: New York, J. Wiley and Sons.
Kimball, B.A., 1991,
Physical, chemical, and biological processes in waters affected by acid mine drainage--From headwater streams to downstream reservoirs, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 365-370.
Rostad, C.E., Bishop, L.M., Ellis, G.S., Leiker, T.J., Monsterleet, S.G., and Pereira, W.E., 1995,
Polychlorinated biphenyls and other synthetic organic contaminants associated with sediments and fish in the Mississippi River, in Meade, R.H., ed., Contaminants in the Mississippi River, 1987-92: U.S. Geological Survey Circular 1133, p. 102-113.
Bradley, P.M., Barber, L.B., Kolpin, D.W., McMahon, P.B., and Chapelle, F.H., 2008,
Potential for 4-n-nonylphenol biodegradation in stream sediments: Environmental Toxicology and Chemistry, v. 27, no. 2, p. 260-265, doi:10.1897/07-333.
Zellweger, G.W., Bencala, K.E., McKnight, D.M., Hirsch, R.M., and Kimball, B.A., 1988,
Practical aspects of tracer experiments in acidic, metal enriched streams, in Mallard, G.E., ed., U.S. Geological Survey Toxic Substances Hydrology Program--Surface-Water Contamination--Proceedings of the technical meeting, Denver, Colorado, February 2-4, 1987: U.S. Geological Survey Open-File Report 87-764, p. 125-130.
Pereira, W.E., Rostad, C.E., and Leiker, T.J., 1989,
Preliminary assessment of the fate and transport of synthetic organic agrochemicals in the lower Mississippi River and its tributaries, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 453-464.
Kimball, B.A., Broshears, R.E., McKnight, D.M., and Bencala, K.E., 1993,
Preliminary evaluation of the effects of an instream pH modification on transport of sulfide-oxidation products, in Alpers, C.N., and Blowes, D.W., eds., Environmental Chemistry of Sulfide Oxidation: Washington, D.C., American Chemical Society ACS Symposium Series 550, p. 224-243.
Harvey, J.W., Bencala, K.E., and Zellweger, G.W., 1991,
Preliminary investigation of the effect of hillslope hydrology on the mechanics of solute exchange between streams and subsurface gravel zones, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 413-418.
Kimball, B.A., Runkel, R.L., and Walton-Day, K., 2007,
Principal locations of metal loading from flood-plain tailings, Lower Silver Creek, Utah, April 2004: U.S. Geological Survey Scientific Investigations Report 2007-5248, 33 p.

Q

Taylor, H.E., Antweiler, R.C., Alpers, C.N., Roth, D.A., Brinton, T.I., Cain, D.J., Ball, J.W., Unruh, D.M., and Dileanis, P.D., 2000,
Quality assurance and quality control, in Alpers, C.N., Taylor, H.E., and Domagalski, J.J., eds., Metals transport in the Sacramento River, California, 1996-97--Volume 1. Methods and data: U.S. Geological Survey Water-Resources Investigations Report 99-4286, p. 38-61.
Paschke, S.S., Kimball, B.A., and Runkel, R.L., 2005,
Quantification and simulation of metal loading to the Upper Animas River, Eureka to Silverton, San Juan County, Colorado, September 1997 and August 1998: U.S. Geological Survey Scientific Investigations Report 2005-5054, 73 p.
Kimball, B.A., Bianchi, F., Walton-Day, K., Runkel, R.L., Nannucci, M., and Salvadori, A., 2007,
Quantification of changes in metal loading from storm runoff, Merse River (Tuscany, Italy), in Cidu, R., and Frau, F., eds., Water in Mining Environments, Proceedings of the International Mine Water Association Symposium 2007, University of Cagliari, Cagliari, Sardinia, Italy, May 27-31, 2007: p. 83-87.
Kimball, B.A., Bianchi, F., Walton-Day, K., Runkel, R.L., Nannucci, M., and Salvadori, A., 2007,
Quantification of changes in metal loading from storm runoff, Merse River (Tuscany, Italy): Mine Water and the Environment, v. 26, no. 4, p. 209-216, doi:10.1007/s10230-007-0020-6.
Kimball, B.A., Runkel, R.L., Walton-Day, K., and Williamson, J.E., 2006,
Quantification of mass loading to Strawberry Creek near the Gilt Edge mine, South Dakota: U.S. Geological Survey Scientific Investigations Report 2006-5006, 41 p.
Kimball, B.A., Walton-Day, K., and Runkel, R.L., 2007,
Quantification of metal loading by tracer injection and synoptic sampling, 1996-2000 (Chapter E9), in Church, S.E., von Guerard, P., and Finger, S.E., eds., Integrated Investigations of Environmental Effects of Historical Mining in the Animas River Watershed, San Juan County, Colorado: U.S. Geological Survey Professional Paper 1651, v. 1, p. 417-495.
Kimball, B.A., Runkel, R.L., Cleasby, T.E., and Nimick, D.A., 2004,
Quantification of metal loading by tracer injection and synoptic sampling, 1997-98 (Chapter D6), in Nimick, D.A., Church, S.E., and Finger, S.E., eds., Integrated investigations of environmental effects of historical mining in the Basin and Boulder Mining Districts, Boulder River watershed, Jefferson County, Montana: U.S. Geological Survey Professional Paper 1652, p. 191-262.
Kimball, B.A., Nimick, D.A., Gerner, L.J., and Runkel, R.L., 1999,
Quantification of metal loading in Fisher Creek by tracer injection and synoptic sampling, Park County, Montana, August 1997: U.S. Geological Survey Water-Resources Investigations Report 99-4119, 40 p.
Kimball, B.A., Runkel, R.L., and Gerner, L.J., 1999,
Quantification of metal loading in French Gulch, Summit County, Colorado, using a tracer-injection study, July 1999: U.S. Geological Survey Water-Resources Investigations Report 98-4078, 38 p.
Kimball, B.A., Johnson, K.K., Runkel, R.L., and Steiger, J.I., 2004,
Quantification of metal loading to Silver Creek through the Silver Maple Claims area, Park City, Utah, May 2002: U.S. Geological Survey Water-Resources Investigations Report 03-4296, 39 p.
Kimball, B.A., Runkel, R.L., and Gerner, L.J., 2001,
Quantification of mine-drainage inflows to Little Cottonwood Creek, Utah, using a tracer-injection and synoptic-sampling study: Environmental Geology, v. 40, p. 1390-1404, doi:10.1007/s002540100320.
Kimball, B.A., Bencala, K.E., and Runkel, R.L., 2000,
Quantifying effects of metal loading from mine drainage, in Proceedings from the Fifth International Conference on Acid Rock Drainage, Denver, Colorado, May 21-24, 2000: Littleton, Colo., Society for Mining, Metallurgy, and Exploration, p. 1381-1389.
Harvey, J.W., and Wagner, B.J., 2000,
Quantifying hydrologic interactions between streams and their subsurface hyporheic zones, in Jones, J.A., and Mulholland, P.J., eds., Streams and Ground Waters: San Diego, Academic Press, p. 3-44.
Ball, J.W., Runkel, R.L., and Nordstrom, D.K., 2005,
Questa baseline and pre-mining ground-water quality investigation. 12. Geochemical and reactive-transport modeling based on tracer injection-synoptic sampling studies for the Red river, New Mexico, 2001-2002: U.S. Geological Survey Scientific Investigations Report 2005-5149, 78 p.
Verplanck, P.L., Nordstrom, D.K., and McCleskey, R.B., 2005,
Questa baseline and pre-mining ground-water quality investigation. 20. Water chemistry trends of the Red River, Taos County, New Mexico, with data from selected seeps, tributaries, and snow, 2000-2004: U.S. Geological Survey Scientific Investigations Report 2006-5028.
Kimball, B.A., Nordstrom, D.K., Runkel, R.L., and Verplanck, P.L., 2006,
Questa baseline and pre-mining ground-water quality investigation. 23. Quantification of solute mass loading for Red River, New Mexico: U.S. Geological Survey Scientific Investigations Report 2006-5004.

R

Gooseff, M.N., McKnight, D.M., and Runkel, R.L., 2004,
Reach-scale cation exchange controls on major ion chemistry of an Antarctic glacial meltwater stream: Aquatic Geochemistry, v. 10, no. 3-4, p. 221-238, doi:10.1007/s10498-004-2260-4.
Ball, J.W., Nordstrom, D.K., and Runkel, R.L., 2000,
Reactive and non-reactive transport modeling for Wightman Fork, Summitville Mine, Colorado--Application of the OTIS/OTEQ model to a low-flow synoptic study, in Proceedings from the Fifth International Conference on Acid Rock Drainage, Denver, Colorado, May 21-24, 2000: Littleton, Colo., Society for Mining, Metallurgy, and Exploration, v. 1 of 2, p. 125-134.
Broshears, R.E., 1996,
Reactive solute transport in acidic streams: Water, Air, and Soil Pollution, v. 90, no. 1-2, p. 195-204.
Broshears, R.E., Runkel, R.L., Kimball, B.A., Bencala, K.E., and McKnight, D.M., 1996,
Reactive solute transport in an acidic stream--Experimental pH increase and simulation of controls on pH, aluminum, and iron: Environmental Science and Technology, v. 30, no. 10, p. 3016-24, doi:10.1021/es960055u.
Runkel, R.L., Bencala, K.E., Broshears, R.E., and Chapra, S.C., 1996,
Reactive solute transport in streams--1, Development of an equilibrium-based model: Water Resources Research, v. 32, no. 2, p. 409-418, 95WR03106, doi:10.1029/95WR03106.
Runkel, R.L., McKnight, D.M., Bencala, K.E., and Chapra, S.C., 1996,
Reactive solute transport in streams--2, Simulation of a pH modification experiment: Water Resources Research, v. 32, no. 2, p. 419-430, 95WR03107, doi:10.1029/95WR03107.
Runkel, R.L., Kimball, B.A., McKnight, D.M., and Bencala, K.E., 1999,
Reactive solute transport in streams--A surface complexation approach for trace metal sorption: Water Resources Research, v. 35, no. 12, p. 3829-3840, 1999WR900259, doi:10.1029/1999WR900259.
Ball, J.W., Runkel, R.L., and Nordstrom, D.K., 2001,
Reactive transport modeling at high-flow - Wightman Fork/Alamosa River, USA, in Cidu, R., ed., Proceedings of the Tenth International Symposium on Water - Rock Interaction, Villasimius, Italy, July 10-15, 2001: A.A. Balkema Publishers, v. 2, p. 1181-1184.
Fuller, C.C., and Harvey, J.W., 2000,
Reactive uptake of trace metals in the hyporheic zone of a mining-contaminated stream, Pinal Creek, Arizona: Environmental Science and Technology, v. 34, no. 7, p. 1150-1155, doi:10.1021/es990714d.
Battaglin, W.A., and Goolsby, D.A., 1994,
Relations between herbicide use and annual transport of herbicides in midwestern rivers, 1991-92, in Weigmann, D.L., ed., New Directions in Pesticide Research Development, Management, and Policy--Proceedings of the Fourth National Conference, on Pesticides, Richmond, Va., November 1-3, 1993: p. 711-723.
Battaglin, W.A., Goolsby, D.A., and Mueller, D.K., 1994,
Relations between use, concentration, and transport of agricultural chemicals in the Mississippi River basin, in Marston, R.A., and Hasfurther, V.R., eds., Effects of Human-induced Changes on Hydrologic System--Proceedings of the American Water Resources Association summer symposium, Jackson Hole, Wyoming, June 26-29, 1994: p. 1073-1086.
Brooks, P.D., McKnight, D.M., and Bencala, K.E., 1999,
The relationship between soil heterotrophic activity, soil dissolved organic carbon (DOC) leachate, and catchment-scale DOC export in headwater catchments: Water Resources Research, v. 35, no. 6, p. 1895-1902, 1998WR900125, doi:10.1029/1998WR900125.
Runkel, R.L., and Chapra, S.C., 1994,
Reply to "Comment on an efficient numerical solution of the transient storage equations for solute transport in small streams" by Dawes and Short: Water Resources Research, v. 30, no. 10, p. 2863-2865.
Wanty, R.B., Verplanck, P.L., Tuttle, M., Runkel, R.L., Berger, B.R., and Kimball, B.A., 2004,
Resolving natural and anthropogenic sources of solutes to a watershed from historic mining, in Wanty, R.B., and Seal III, R.R., eds., Proceedings of the Eleventh International Symposium of Water-Rock Interaction WRI-II, Saratoga Springs, New York, June 27-July 2, 2004: A.A. Balkema, p. 1659-1663.
Osborne, L.L., Bayley, P.B., Higler, L.W.G., Statzner, B., Triska, F., and Iverson, T.M., 1993,
Restoration of lowland streams--An introduction: Freshwater Biology, v. 29, p. 187-194.
Antweiler, R.C., Dileanis, P.D., Alpers, C.N., and Taylor, H.E., 2000,
Results, in Alpers, C.N., Taylor, H.E., and Domagalski, J.J., eds., Metals transport in the Sacramento River, California, 1996-97--Volume 1. Methods and data: U.S. Geological Survey Water-Resources Investigations Report 99-4286, p. 62-97.
Witkowski, P.J., Smith, J.A., Fusillo, T.V., and Chiou, C.T., 1987,
A review of surface-water sediment fractions and their interactions with persistent manmade organic compounds: U.S. Geological Survey Circular 993, 39 p.
Bencala, K.E., Rathbun, R.E., Jackman, A.P., Kennedy, V.C., Zellweger, G.W., and Avanzino, R.J., 1983,
Rhodamine-WT dye losses in a mountain stream environment: Water Resources Bulletin, v. 19, p. 943-950.
Nordstrom, D.K., 2005,
A river on the edge--Water quality in the Red River and the USGS background study, in Price, L.G., Bland, D., McLemore, V.T., and Barker, J.M., eds., Mining in New Mexico, Decision-Makers Conference 2005, Taos region, Socorro, New Mexico: New Mexico Bureau of Geology and Mineral Resources, p. 64-67.
Triska, F.J., Duff, J.H., and Avanzino, R.J., 1993,
The role of water exchange between a stream channel and its hyporheic zone in nitrogen cycling at the terrestrial-aquatic interface: Hydrobiologia, v. 251, p. 167-184.

S

Constantz, J., Cox, M.H., Sarma, L., and Mendez, G., 2003,
The Santa Clara River--The last natural river of Los Angeles, in Stonestrom, D.A., and Constantz, J., eds., Heat as a tool for studying the movement of ground water near streams: U.S. Geological Survey Circular 1260, p. 21-27.
McKnight, D.M., Smith, R.L., Harnish, R.A., Miller, C.L., and Bencala, K.E., 1993,
Seasonal relationships between planktonic microorganisms and dissolved organic material in an alpine stream: Biogeochemistry, v. 21, p. 39-59.
Triska, F.J., and Duff, J.H., 1997,
Sediment associated nitrification and denitrification potentials at the interface between a bankside ground water seep and the channel of the Shingobee River, in Winter, T.C., ed., Interdisciplinary research initiative--Hydrological and biogeochemical research in the Shingobee River headwaters area, north-central Minnesota: U.S. Geological Survey Water-Resources Investigations Report 96-4215, p. 155-160.
Hart, R.J., Taylor, H.E., Antweiler, R.C., Graham, D.D., Fisk, G.G., Riggins, S.G., and Flynn, M.E., 2005,
Sediment chemistry of the Colorado River delta of Lake Powell, Utah, 2001: U.S. Geological Survey Open-File Report 2005-1178, 33 p.
Gooseff, M.N., Bencala, K.E., Scott, D.T., Runkel, R.L., and McKnight, D.M., 2005,
Sensitivity analysis of conservative and reactive stream transient storage models applied to field data from multiple-reach experiments: Advances in Water Resources, v. 28, no. 5, p. 479-492, doi:10.1016/j.advwatres.2004.11.012.
Writer, J.H., 1992,
Sewage contamination in the Upper Mississippi River as measured by the fecal sterol coprostanol: Boulder, University of Colorado, Master's Thesis, 99 p.
Writer, J.H., Leenheer, J.A., Barber, L.B., Amy, G.L., and Chapra, S.C., 1995,
Sewage contamination in the Upper Mississippi River as measured by the fecal sterol, coprostanol: Water Research, v. 29, no. 6, p. 1427-1436, doi:10.1016/0043-1354(94)00304-P.
Van Metre, P.C., Wilson, J.T., Callender, E., and Fuller, C., 1998,
Similar rates of decrease of persistent, hydrophobic contaminants in riverine systems: Environmental Science and Technology, v. 32, p. 3312-3317, doi:10.1021/es9801902.
Runkel, R.L., 1995,
Simulation models for conservative and nonconservative solute transport in streams, in Osterkamp, W.R., ed., Effects of scale on interpretation and management of sediment and water quality--Proceedings of the 1995 Meeting of the International Association of Hydrological Sciences, Boulder, Colorado, July 3-14, 1995: International Association of Hydrological Sciences IAHS Publication 225, p. 153-159.
Broshears, R.E., Kimball, B.A., and Runkel, R.L., 1996,
Simulation of reactive transport during a pH modification experiment in a mountain stream affected by acid mine drainage, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 781-788.
Bencala, K.E., 1983,
Simulation of solute transport in a mountain pool and-riffle stream with a kinetic mass transfer model for sorption: Water Resources Research, v. 19, no. 3, p. 732-738, doi:10.1029/WR019i003p00732.
Bencala, K.E., and Walters, R.A., 1983,
Simulation of solute transport in a mountain pool-and-riffle stream--A transient storage model: Water Resources Research, v. 19, no. 3, p. 718-724, doi:10.1029/WR019i003p00718.
Runkel, R.L., Kimball, B.A., Walton-Day, K., and Verplanck, P.L., 2007,
A simulation-based approach for estimating premining water quality--Red Mountain Creek, Colorado: Applied Geochemistry, v. 22, no. 9, p. 1899-1918, doi:10.1016/j.apgeochem.2007.03.054.
Mitchell, M.J., Piatek, K.B., Christopher, S., Mayer, B., Kendall, C., and McHale, P., 2006,
Solute sources in stream water during consecutive fall storms in a northern hardwood forest watershed--A combined hydrological, chemical and isotopic approach: Biogeochemistry, v. 78, p. 217-246, doi:10.1007/s10533-005-4277-1.
Eychaner, J.H., 1991,
Solute transport in perennial streamflow at Pinal Creek, Arizona, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 481-485.
Runkel, R.L., and Restrepo, P.J., 1993,
Solute transport modeling under unsteady flow regimes--An application of the Modular Modeling Sytem, in Hon, K., ed., Water management in the `90s--A Time for Innovation--Proceedings of the 20th Anniversary Conference of the Water Resource Planning and Management Division of the American Society of Civil Engineers, Seattle, Wash., May 1-5, 1993: Washington, D.C., American Society of Civil Engineers, p. 256-259.
Wagner, B.J., and Harvey, J.W., 1996,
Solute-transport parameter estimation for an injection experiment at Pinal Creek, Arizona, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 1081-1087.
Runkel, R.L., 1996,
Solution of the advection-dispersion equation--Continuous load of finite duration: Journal of Environmental Engineering, v. 122, no. 9, p. 830-832, doi:10.1061/(ASCE)0733-9372(1996)122:9(830).
Jobson, H.E., and Carey, W.P., 1988,
Some observations on the interaction of fine sediment with alluvial streambeds, in Mallard, G.E., ed., U.S. Geological Survey Toxic Substances Hydrology Program--Surface-Water Contamination--Proceedings of the technical meeting, Denver, Colorado, February 2-4, 1987: U.S. Geological Survey Open-File Report 87-764, p. 145-156.
McKnight, D.M., Bencala, K.E., Zellweger, G.W., Aiken, G.R., Feder, G.L., and Thorn, K.A., 1992,
Sorption of dissolved organic material by hydrous aluminum and iron oxides occurring at the confluence of Deer Creek with the Snake River, Summit County, Colorado: Environmental Science and Technology, v. 26, no. 7, p. 1388-1396, doi:10.1021/es00031a017.
Horowitz, A.J., Elrick, K.A., and Cook, R.B., 1989,
Source and transport of arsenic in the Whitewood Creek--Belle Fourche--Cheyenne River--Lake Oahe system, South Dakota, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 223-233.
Church, S.E., Kimball, B.A., Fey, D.L., Ferderer, D.A., Yager, T.J., and Vaughn, R.B., 1997,
Source, transport, and partitioning of metals between water, colloids, and bed sediments of the Animas River, Colorado: U.S. Geological Survey Open-File Report 97-151, 1-135 p.
Goolsby, D.A., Battaglin, W.A., and Hooper, R.P., 1997,
Sources and transport of nitrogen in the Mississippi River Basin, in From the Corn Belt to the Gulf--Agriculture and Hypoxia in the Mississippi River Watershed, Proceedings, St. Louis, Mo., July 14-15, 1997: American Farm Bureau Federation, p. 6.
Goolsby, D.A., Hooper, R.P., and Battaglin, W.A., 1998,
Sources and transport of nitrogen in the Mississippi River Basin, in Proceedings "From the Corn Belt to the Gulf...Agriculture and Hypoxia in the Mississippi River Watershed," American Farm Bureau Federation Workshop, St Louis, Missouri, July 14-15, 1997: St Louis, Missouri, American Farm Bureau Federation, p. 59-64 (document has no page numbers).
Verstraeten, I., Meyer, M.T., Skopp, J., Speth, T., Obrist, J.G., and Vogel, J.R., 2003,
Sources, temporal variations, and fate and transport of selected endocrine disruption compounds and pharmaceuticals, Nebraska, USA, in Proceedings of the 3rd International Conference on Pharmaceuticals and Endocrine Disrupting Chemicals in Water, Minneapolis, Minnesota, March 19-21, 2003: National Ground Water Association, p. 292, CD-ROM.
Flegal, A.R., Brown, C.L., Squire, S., Ross, J.R.M., Scelfo, G.M., and Hibdon, S., 2007,
Spatial and temporal variations in silver contamination and toxicity in San Francisco Bay: Environmental Research, v. 105, no. 1, p. 34-52, doi:10.1016/j.envres.2007.05.006.
Bencala, K.E., McKnight, D.M., Zellweger, G.W., and Goad, J., 1986,
The stability of Rhodamine WT dye in trial studies of solute transport in an acidic and metal-rich stream, in Subitzky, S., ed., Selected papers in the hydrologic sciences, 1986: U.S. Geological Survey Water-Supply Paper 2310, p. 87-95.
Aulenbach, B.T., Buxton, H.T., Battaglin, W.A., and Coupe, R.H., 2007,
Streamflow and nutrient fluxes of the Mississippi-Atchafalaya River Basin and subbasins for the period of record through 2005: U.S. Geological Survey Open-File Report 2007-1080 (Available On Line Only).
Boyer, E.W., McKnight, D.M., Bencala, K.E., Brooks, P.D., Anthony, M.W., Zellweger, G.W., and Harnish, R.E., 1999,
Streamflow and water quality characteristics for the Upper Snake River and Deer Creek Catchments in Summit County, Colorado--Water years 1980 to 1990: Institute of Arctic and Alpine Research, University of Colorado Occasional Paper 53, 81 p (+ diskett).
Alpers, C.N., Taylor, H.E., Roth, D.A., Cain, D.J., Ball, J.W., Unruh, D.M., and Deleanis, P.D., 2000,
Study design--Field and laboratory methods, in Alpers, C.N., Taylor, H.E., and Domagalski, J.J., eds., Metals transport in the Sacramento River, California, 1996-97--Volume 1. Methods and data: U.S. Geological Survey Water-Resources Investigations Report 99-4286, p. 19-37.
Triska, F.J., Jackman, A.P., Duff, J.H., and Avanzino, R.J., 2000,
Subchannel dispersion and velocity beneath a relict beaver dam, Shingobee River, Minnesota, USA--Implications for nutrient cycling: Internationale Vereinigung fur Theoretische und Angewandte Limnologie, v. 27, p. 463-467.
Alpers, C.N., Taylor, H.E., and Domagalski, J.J., 2000,
Summary and conclusions, in Alpers, C.N., Taylor, H.E., and Domagalski, J.J., eds., Metals transport in the Sacramento River, California, 1996-97--Volume 1. Methods and data: U.S. Geological Survey Water-Resources Investigations Report 99-4286, p. 98-99.
Ortiz, R.F., and Ball, J.W., 2003,
Summary of synoptic sampling and tracer-injection tests in the Alamosa River Basin during low-flow conditions, October 1998--A sampling analysis report for modeling reactive transport of metals for the Summitville Mine: U.S. Geological Survey Open-File Report 03-466, 55 p.
Ortiz, R.F., and Ball, J.W., 2003,
Summary of synoptic sampling and tracer-injection tests in the Alamosa River basin during high-flow conditions, June 1999--A sampling analysis report for modeling reactive transport of metals for the Summitville Mine, Colorado: U.S. Geological Survey Open-File Report 03-467, 60 p.
Schemel, L.E., Hager, S.W., and Childers, D., Jr., 1996,
The supply and carbon content of suspended sediment from the Sacramento River to San Francisco Bay--I. Carbon and nitrogen concentrations and transports, in Hollibaugh, J.T., ed., San Francisco Bay--The ecosystem: San Francisco, American Association for the Advancement of Science, Pacific Division, p. 217-236.
Myhre, S.H., and Bencala, K.E., 1998,
Surface-water quality data--Permanante and Saratoga Creeks, Santa Clara Valley, California, water year 1997: U.S. Geological Survey Open-File Report 98-4, 39 p.
Squillace, P.J., and Engberg, R.A., 1988,
Surface-water quality of the Cedar River basin, Iowa-Minnesota, with emphasis on the occurrence and transport of herbicides, May 1984 through November 1985: U.S. Geological Survey Water-Resources Investigations Report 88-4060, 81 p.
Kimball, B.A., Bencala, K.E., and Besser, J.M., 1999,
Synthesis of watershed characterization for making remediation decisions, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 3-7.
Pereira, W.E., Rostad, C.E., and Leiker, T.J., 1992,
Synthetic organic agrochemicals in the lower Mississippi River and its major tributaries--Distribution, transport and fate: Journal of Contaminant Hydrology, v. 9, p. 175-188, doi:10.1016/0169-7722(92)90057-L.
Jakeman, A.J., Hornberger, G.M., Littlewood, I.G., Whitehead, P.G., Harvey, J.W., and Bencala, K.E., 1992,