Development of Computer Simulation Models and Statistical Analysis Software, Publications, and Documentation

Chin, U.P., Weber, W.J., Jr., and Chiou, C.T., 1991,

A thermodynamic partition model for binding of nonionic organic compounds by organic colloids and implications for their sorption to soils and sediment, in Baker, R.A., ed., Humics and soils, v. 1 of Organic substances and sediments in water: Chelsea, Mich., Lewis Publishers, p. 251-273.

Haverkamp, R., Nimmo, J.R., and Reggiani, P., 2002,

Property-transfer models, in Dane, J.H., and Topp, G.C., eds., Methods of Soil Analysis, Part 4, Physical Methods: Madison, Wisconsin, Soil Science Society of America, p. 759-761.

Healy, R.W., and Russell, T.F., 1992,

Solution of the advection-dispersion equation by a finite-volume Eulerian-Langrangian local adjoint method, in Russell, T.F., Ewing, R.E., Brebbia, C.A., and Pinder, G.F., eds., Computational methods in water resources IX, v. 1. Numerical methods in water resources: Boston and London, Computational Mechanics Publications (Boston) and Elsevier (London), p. 33-39.

Heberton, C.I., Russell, T.F., Konikow, L.F., and Hornberger, G.Z., 2000,

Three-dimensional finite-volume F-LLAM implementation, in Bentley, and others, eds., Computational Methods in Water Resources: Rotterdam, A.A. Balkema, p. 603-610.

Hsieh, P.A., and others, a., 2001,

Conceptual models of flow and transport in the fractured vadose zone: Washington, D.C., National Academy Press, p.

Kipp, K.L., Russell, T.F., and Otto, J.S., 1992,

D4Z--A new renumbering for iterative solution of ground-water flow and solute-transport equations, in Russell, T.F., and others, eds., Computational methods in water resources IX, v. 1. Numerical methods in water resources: Boston, Computational Mechanics Publications, p. 495-502.

Kipp, K.L., Russell, T.F., and Otton, J.S., 1994,

Three-dimensional D4Z renumbering for iterative solution of ground-water flow and transport equations, in Peters, A., and others, eds., Computational methods in water resources X: Dordrecht, The Netherlands, Academic Publishers, v. 2, p. 1417-1424.

Konikow, L.F., and Patten, E.P., Jr., 1985,

Groundwater forecasting, in Anderson, M.G., and Burt, T.P., eds., Hydrological forecasting: New York, John Wiley and Sons Ltd., p. 221-270.

Mendez, E., Widdowson, M., Brauner, S., Chapelle, F., and Casey, C., 2004,

Natural attenuation software (NAS)--A computer program for estimating remediation times of contaminated groundwater, in Latini, G., Passerini, G., and Brebbia, C., eds., Development and Application of Computer Techniques to Environmental Studies X: WIT Press, p. 185-194, ISBN:1-85312-718-3.

Nimmo, J.R., 2002,

Property transfer from particle and aggregate size to water retention [property-transfer models], in Dane, J.H., and Topp, G.C., eds., Methods of Soil Analysis, Part 4, Physical Methods: Madison, Wisconsin, Soil Science Society of America, p. 777-782.

Nordstrom, D.K., and Archer, D.G., 2003,

Arsenic thermodynamic data and environmental geochemistry, in Welch, A.H., and Stollenwerk, K.G., eds., Arsenic in ground water--Geochemistry and Occurrence: Boston, Kluwer Academic Publishers, p. 1-25.

Packman, A.I., and Bencala, K.E., 2000,

Modeling surface - subsurface hydrologic interactions, in Jones, J.B., and Mulholland, P.J., eds., Streams and Ground Waters: Academic Press, p. 45-80.

Parkhurst, D.L., and Plummer, L.N., 1993,

Geochemical models (chapter 9), in Alley, W.M., ed., Regional Ground-Water Quality: New York, Van Nostrand Reinhold, p. 199-225.

Solomon, D.K., Cook, P.G., and Plummer, L.N., 2006,

Models of groundwater ages and residence times (chapter 6), in IAEA, ed., Use of chlorofluorocarbons in hydrology--A guidebook: Vienna, International Atomic Energy Agency, p. 73-88.

Anderman, E.R., Hill, M.C., and Poeter, E.P., 1994,

Two-dimensional advective transport in nonlinear regression--Sensitivities and uncertainty of plume-front observations, in Warner, J.W., and van der Heijde, P., eds., Proceedings, 1994 Groundwater Modeling Conference, Fort Collins, Colorado, August 10-12, 1994: Fort Collins, Colo., Colorado State University, p. 55-62.

Appelo, C.A.J., and Parkhurst, D.L., 1998,

Enhancements to the geochemical model PHREEQC-1D transport and reaction kinetics, in Arehart, G.B., and Hulston, J.R., eds., Proceedings of the 9th International Symposium on Water-Rock Interaction (WRI-9), Rottersam: A.A. Balkema, p. 873-876.

Battaglin, W.A., Ulery, R.L., and Vowinkel, E.F., 1989,

Method for simulating water-table altitudes from stream and drainage-basin locations by use of a geographic information system, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 531-539.

Bekins, B.A., Warren, E., and Godsy, E.M., 1997,

Comparing zero and first order approximations to the Monod Model, in Alleman, B.C., and Leeson, A., eds., In Situ and On Site Bioremediation--Procedings of the Fourth International Symposium on In Situ And On-Site Bioremediation, New Orleans, La., April 28-May 1, 1997: Columbus, Ohio, Battelle Press, v. 5, p. 547-552 (Contact The Conference Group Inc. for information on the availability of the proceedings.).

Broshears, R.E., Runkel, R.L., and Kimball, B.A., 1994,

Development and application of a reactive solute transport model for trace metals in mountain streams, in Dutton, A.R., ed., Toxic Substances and the Hydrologic Sciences--Proceedings of the conference, Austin, Texas, April 10-13, 1994: Minneapolis, Minn., American Institute of Hydrology, p. 19-34.

Burkart, M.R., 1990,

Interagency research and technical integration, in Information exchange on models and data needs relating to the impact of agricultural practices on water quality--Workshop Proceedings, Reston, Virginia, February 5-8, 1990: U.S. Geological Survey, Office Water Data Coordination, p. 11-12.

Casulli, V., Bertolazzi, E., and Cheng, R.T., 1993,

TRIM_3D--A three-dimensional model for accurate simulation of shallow water flow, in 1993 National Conference on Hydraulic Engineering, Proceedings, San Francisco, California, July, 1993: American Society of Civil Engineers, p. 1988-1993.

Casulli, V., and Cheng, R.T., 1994,

Solutions of primitive equations for three-dimensional tidal circulation, in Proceedings of the Third International Conference on Estuarine and Coastal Modeling, Chicago, Ill., September, 1993: American Society of Civil Engineers, p. 396-406.

Cheng, R.T., Smith, P.E., and Casulli, V., 1993,

Recent development in three-dimensional numerical estuarine models, in Proceedings, 1993 National Conference on Hydraulic Engineering, San Francisco, California, July, 1993: American Society of Civil Engineers, p. 1982-1987.

Cheng, R.T., and Smith, R.E., 1998,

A NOWCAST model for tides and tidal currents in San Francisco Bay, California, in Ocean Community Conference ‘98, Marine Technology Society, Baltimore, Maryland, November 15-19, 1998: Marine Technology Society, v. I, p. 537-543.

Cunningham, K.M., and Goldberg, M.C., 1989,

A model for photolytic decomposition of toxic materials adsorbed onto iron oxyhydroxides in surface waters, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 608.

Curtis, G.P., Cozzarelli, I.M., Baedecker, M.J., and Bekins, B.A., 1999,

Coupled biogeochemical modeling of ground water contamination at the Bemidji, Minnesota, crude oil spill site, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 153-158.

Diodato, D.M., 1999,

Simulation of mass transport using the FracTran98 Module of FracSys2000, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 833-840.

Glynn, P.D., Engesgaard, P., and Kipp, K.L., 1991,

Use and limitations of two computer codes for simulating geochemical mass transport at the Pinal Creek toxic-waste site, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 454-460.

Glynn, P.D., and Parkhurst, D.L., 1992,

Modeling non-ideal solid-solution aqueous-solution reactions in mass transfer computer codes, in Kharaka, Y.K., and Maest, A.S., eds., Low temperature environments, v. 1 of Water-rock interaction--Proceedings of the 7th International Symposium on Water-Rock Interaction--WRI-7, Park City, Utah, July 9-23, 1992: Rotterdam, Balkema, p. 175-179.

Goode, D.J., 1999,

Modifications to the solute-transport model MOC3D for simple reactions, double porosity, and age, with application at Mirror Lake, New Hampshire, and other sites, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 821-832.

Goode, D.J., and Konikow, L.F., 1991,

Testing a method-of-characteristics model of three-dimensional solute transport in ground water, in Lennon, G.P., ed., Proceedings of the International Symposium on Ground Water in Practice, Nashville, Tenn., July 29-August 2, 1991: New York, American Society of Civil Engineers, p. 21-27.

Healy, R.W., and Russell, T.F., 2000,

Treatment of internal sources in the finite-volume ELLAM, in Proceedings of the XEEI International Conference on Computational Methods in Water Resources, Calgary, Alberta, June 25-29, 2000: p. 619-622.

Hem, J.D., and Roberson, C.E., 1990,

Aluminum hydrolysis reactions and products in mildly acidic aqueous systems, in Melchior, D.C., and Bassett, R.L., eds., Chemical Modeling of Aqueous Systems II: Washington, D.C., American Chemical Society ACS Symposium Series 416, p. 429-446.

Joss, C.J., and Baehr, A.L., 1996,

A multispecies transport model to simulate vapor extraction and bioventing remediation of unsaturated zones contaminated with gasoline, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 61-63.

Majure, J.J., and Eash, D.A., 1991,

An automated method to quantify physical basin characteristics, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 558-561.

Moench, A.F., and Kharaka, Y.K., 2001,

Analytical model for deep well injection of cold brine into a hot aquifer, in Cidu, R., ed., Proceedings of the Tenth International Symposium WRI-10, Villasimius, Italy, June 10-15, 2001: A.A. Balkema, v. 1, p. 193-196.

Nordstrom, D.K., Plummer, L.N., Langmuir, D., Busenberg, E., May, H.M., Jones, B.F., and Parkhurst, D.L., 1990,

Revised chemical equilibrium data for water-mineral reactions and their limitations, in Bassett, R.L., and Melchior, D.C., eds., Chemical modeling in aqueous systems--II: Washington, D.C., American Chemical Society Society Symposium Series 416, p. 398-413.

Paillet, F.L., and Barton, C.A., 1996,

The synthetic roadcut--A numerical technique for the multiple-scale integration of surface and borehole data, in Symposium on Application of Geophysics to Environmental and Engineering Problems, Keystone, Colorado, April 28-May 2, 1996: Englewood, Colo., Engineering and Environmental Geophysics Society, p. 823-83.

Papoulias, D.M., Noltie, D.B., and Tillitt, D.E., 1999,

A model fish system to test chemical effects on sexual differentiation and development, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 2 of 3--Contamination of Hydrologic Systems and Related Ecosystems: U.S. Geological Survey Water-Resources Investigations Report 99-4018B, p. 447-453.

Plummer, L.N., and Parkhurst, D.L., 1990,

Application of the Pitzer Equations to the PHREEQE geochemical model, in Melchoir, D.C., and Bassett, R.L., eds., Chemical modeling of aqueous systems II: Washington, D.C., American Chemical Society ACS Symposium Series 416, p. 128-137.

Plummer, L.N., Prestemon, E.C., and Parkhurst, D.L., 1992,

NETPATH--An interactive code for interpreting NET geochemical reactions from chemical and isotopic data along a flow PATH, in Kharaka, Y., and Maest, A.S., eds., Low temperature environments, v. 1 of Water-rock interaction--Proceedings of the 7th International Symposium on Water-Rock Interaction--WRI-7, Park City, Utah, July 9-23, 1992: Rotterdam, Balkema, p. 239-242.

Runkel, R.L., 1995,

Simulation models for conservative and nonconservative solute transport in streams, in Osterkamp, W.R., ed., Effects of scale on interpretation and management of sediment and water quality--Proceedings of the 1995 Meeting of the International Association of Hydrological Sciences, Boulder, Colorado, July 3-14, 1995: International Association of Hydrological Sciences IAHS Publication 225, p. 153-159.

Runkel, R.L., Bencala, K.E., and Broshears, R.E., 1996,

An equilibrium-based simulation model for reactive solute transport in small streams, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 775-780.

Runkel, R.L., Bencala, K.E., and Kimball, B.A., 1999,

Modeling solute transport and geochemistry in streams and rivers using OTIS and OTEQ, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 109-118.

Runkel, R.L., and Restrepo, P.J., 1993,

Solute transport modeling under unsteady flow regimes--An application of the Modular Modeling Sytem, in Hon, K., ed., Water management in the `90s--A Time for Innovation--Proceedings of the 20th Anniversary Conference of the Water Resource Planning and Management Division of the American Society of Civil Engineers, Seattle, Wash., May 1-5, 1993: Washington, D.C., American Society of Civil Engineers, p. 256-259.

Rutledge, A.T., and Helgesen, J.O., 1989,

Use of a simplified transport model for pesticides in the unsaturated zone, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic-Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 523-530.

Sanford, W.E., Wood, W.W., and Councell, T.B., 1992,

Calcium chloride-dominated brines--An ion-exchange model, in Kharaka, Y.K., and Maest, A.S., eds., Low temperature environments, v. 1 of Water-rock interaction--Proceedings of the 7th International Symposium on Water-Rock Interaction--WRI-7, Park City, Utah, July 13-18, 1992: Rotterdam, A.A. Balkema, p. 669-672.

Smith, P.E., 1994,

San Francisco Bay test case for 3-D model verification, in 1994 National Conference on Hydraulic Engineering, Proceedings, Buffalo, N.Y., August 1-5, 1994: American Society of Civil Engineers, v. 2, p. 885-889.

Smith, P.E., and Larock, B.E., 1993,

A finite-difference model for 3-D flows in bays and estuaries, in 1993 National Conference on Hydraulic Engineering, Proceedings, San Francisco, Calif., July 25-30, 1993: American Society of Civil Engineers, p. 6.

Tiedeman, C.R., Hill, M.C., D'Agnese, F.A., and Faunt, C.C., 2001,

Identifying model parameters important to preductions for guiding hydrogeologic data collection, in Proceedings, MODFLOW-2001, Golden, Colorado, September 2001: p. 195-201.

Troutman, B.M., and Karlinger, M.R., 1986,

Averaging properties of channel networks using methods in stochastic branching theory, in Gupta, V.K., Rodriguez-Iturbe, I., and Wood, E.F., eds., Scale problems in hydrology--Runoff generation and basin response, Symposium, Proceedings, Princeton, New Jersey, October 30-November 3, 1984: Dordrecht, Netherlands, D. Reidel Publishing Co., p. 185-216.

Welty, C., and Baehr, A.L., Joss, C.J., and Dillow, J.J.A., 1991,

Use of mathematical programming coupled with a transport model to optimize the design of vapor-extraction systems, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 276-279.

Winston, R.B., 2001,

MODFLOW GUI and GW-Chart--Tools for building and interpreting MODFLOW models, in Seo, Poeter, and Zheng, eds., Proceedings MODFLOW 2001 and Other Modeling Odysseys Conference, Ground Water Modeling Center, Colorado School of Mines, Golden, Colorado, September 2001: p. 723-727.

Anderman, E.R., and Hill, M.C., 1998,

Improving ground-water flow model calibration with the advective-transport observation (ADV) package to MODFLOWP: U.S. Geological Survey Fact Sheet FS-059-98, 2 p.

Essaid, H.L., and Bekins, B.A., 1998,

Modeling solute-transport and biodegradation with BIOMOC: U.S. Geological Survey Fact Sheet 095-98, 4 p.

Lahvis, M.A., and Baehr, A.L., 1998,

Simulating transport of volatile organic compounds in the unsaturated zone using the computer model R-UNSAT: U.S. Geological Survey Fact Sheet FS-019-98, 4 p.

Runkel, R.L., 2000,

Using OTIS to model solute transport in streams and rivers: U.S. Geological Survey Fact Sheet 138-99, 4 p.

Abrams, R.H., and Loague, K., 2000,

A compartmentalized solute transport model for redox zones in contaminated aquifers--1, Theory and development: Water Resources Research, v. 36, no. 8, p. 2001-2013, 2000WR900110, doi:10.1029/2000WR900110.

Abrams, R.H., and Loague, K., 2000,

A compartmentalized solute transport model for redox zones in contaminated aquifers--2, Field-scale simulations: Water Resources Research, v. 36, no. 8, p. 2015--2029, 10.1029/2000WR900111, doi:10.1029/2000WR900111.

Abrams, R.H., Loague, K., and Kent, D.B., 1998,

Development and testing of a compartmentalized reaction network model for redox zones in contaminated aquifers: Water Resources Research, v. 34, no. 6, p. 1531-1541, 98WR00485, doi:10.1029/98WR00485.

Anderman, E.R., Hill, M.C., and Poeter, E.P., 1996,

Two-dimensional advective transport in ground-water flow parameter estimation: Ground Water, v. 34, no. 6, p. 1001-1009.

Andraski, B.J., and Jacobson, E.A., 2000,

Testing a full-range soil-water retention function in modeling water potential and temperature: Water Resources Research, v. 36, no. 10, p. 3081-3089, 2000WR900193, doi:10.1029/2000WR900193.

Baehr, A.L., and Baker, R.J., 1995,

Use of a reactive gas transport model to determine rates of hydrocarbon biodegradation in unsaturated porous media: Water Resources Research, v. 31, no. 11, p. 2877-2882, 95WR02077, doi:10.1029/95WR02077.

Baehr, A.L., and Bruell, C.J., 1990,

Application of the Stefan-Maxwell equations to determine limitations of Fick's Law when modeling organic vapor transport in sand columns: Water Resources Research, v. 26, no. 6, p. 1155-1163, doi:10.1029/WR026i006p01155.

Baehr, A.L., and Corapcioglu, M.Y., 1987,

A compositional multiphase model for groundwater contamination by petroleum products--2, numerical solution: Water Resources Research, v. 23, no. 1, p. 201-213.

Baehr, A.L., and Joss, C.J., 1995,

An updated model of induced airflow in the unsaturated zone: Water Resources Research, v. 31, no. 2, p. 417-421, 94WR02423, doi:10.1029/94WR02423.

Battaglin, W.A., and Goolsby, D.A., 1998,

Regression models of herbicide concentrations in outflow from reservoirs in the midwestern USA, 1992-1993: Journal of the American Water Resources Association, v. 34, no. 6, p. 1369-1390, doi:10.1111/j.1752-1688.1998.tb05438.x.

Bekins, B.A., Cozzarelli, I.M., and Curtis, G.P., 2005,

A simple method for calculating growth rates of petroleum hydrocarbon plumes: Ground Water, v. 0, no. 0, doi:10.1111/j.1745-6584.2005.00093.x.

Bekins, B.A., Warren, E., and Godsy, E.M., 1998,

A comparison of zero-order, first-order, and Monod biotransformation models: Ground Water, v. 36, no. 2, p. 261-268.

Bencala, K.E., 1983,

Simulation of solute transport in a mountain pool and-riffle stream with a kinetic mass transfer model for sorption: Water Resources Research, v. 19, no. 3, p. 732-738, doi:10.1029/WR019i003p00732.

Bencala, K.E., and Walters, R.A., 1983,

Simulation of solute transport in a mountain pool-and-riffle stream--A transient storage model: Water Resources Research, v. 19, no. 3, p. 718-724, doi:10.1029/WR019i003p00718.

Boyer, E.W., Hornberger, G.M., Bencala, K.E., and McKnight, D.M., 2000,

Effects of asynchronous snowmelt on flushing of dissolved organic carbon--A mixing model approach: Hydrological Processes, v. 14, no. 18, p. 3291-3308, doi:10.1002/1099-1085(20001230)14:18<3291::AID-HYP202>3.0.CO;2-2.

Boyer, E.W., Hornberger, G.M., Bencala, K.E., and McKnight, D.M., 1996,

Overview of a simple model describing variation of dissolved organic carbon in an upland catchment: Ecological Modeling, v. 86, p. 183-188, doi:10.1016/0304-3800(95)00049-6.

Brown, J.G., Bassett, R.L., and Glynn, P.D., 2000,

Reactive transport of metal contaminants in alluvium--Model comparison and column simulation: Applied Geochemistry, v. 15, no. 1, p. 35-50, doi:10.1016/S0883-2927(99)00004-9.

Cabaniss, S.E., Zhou, Q., Maurice, P.A., Chin, Y., and Aiken, G.R., 2000,

A log-normal distribution model for the molecular weight of aquatic fulvic acids: Environmental Science and Technology, v. 34, no. 6, p. 1103-1109, doi:10.1021/es990555y.

Chapra, S.C., and Runkel, R.L., 1999,

Modeling impact of storage zones on stream dissolved oxygen: Journal of Environmental Engineering, v. 125, no. 5, p. 415-419.

Cheng, R.T., Casulli, V., and Gartner, J.W., 1993,

Tidal, residual, intertidal mudflat (TRIM) model and its applications to San Francisco Bay, California: Estuarine, Coastal and Shelf Science, v. 36, p. 235-280, doi:10.1006/ecss.1993.1016.

Chiou, C.T., Schmedding, D.W., and Manes, M., 2005,

Improved prediction of octanol--water partition coefficients from liquid-solute water solubilities and molar volumes: Environmental Science and Technology, v. 39, no. 22, p. 8840-8846, doi:10.1021/es050729d.

Chiou, C.T., Sheng, G., and Manes, M., 2001,

A partition-limited model for the plant uptake of organic contaminants from soil and water: Environmental Science and Technology, v. 35, no. 7, p. 1437-1444, doi:10.1021/es0017561.

Cloern, J.E., Grenz, C., and Vidergar-Lucas, L., 1995,

An empirical model of the phytoplankton chlorophyll/carbon ratio--The conversion factor between productivity and growth rate: Limnology and Oceanography, v. 40, no. 7, p. 1313-1321.

Cole, B.E., and Cloern, J.E., 1987,

An empirical model for estimating phytoplankton productivity in estuaries: Marine Ecology Progress Series, v. 36, p. 299-305.

Corapcioglu, M.Y., and Baehr, A.L., 1987,

A compositional multiphase model for groundwater contamination by petroleum products--1, Theoretical considerations: Water Resources Research, v. 23, no. 1, p. 191-200.

Curtis, G.P., 2003,

Comparison of approaches for simulating reactive solute transport involving organic degradation reactions by multiple terminal electron acceptors: Computers and Geosciences, v. 29, no. 3, p. 319-329, doi:10.1016/S0098-3004(03)00008-6.

Curtis, G.P., Fox, P., Kohler, M., and Davis, J.A., 2004,

Comparison of in situ uranium K _D values with a laboratory determined surface complexation model: Applied Geochemistry, v. 19, p. 1643-1653, doi:10.1016/j.apgeochem.2004.03.004.

Davis, J.A., Fuller, C.C., and Cook, A.D., 1987,

A model for trace metal sorption by calcite--Adsorption of Cd2+ and subsequent solid solution formation: Geochimica et Cosmochimica Acta, v. 51, p. 1477-1490.

Davis, J.A., Meece, D.E., Kohler, M., and Curtis, G.P., 2004,

Approaches to surface complexation modeling of uranium(VI) adsorption on aquifer sediments: Geochimica et Cosmochimica Acta, v. 68, p. 3621-3641, doi:10.1016/j.gca.2004.03.003.

Deng, F.-W., Cushman, J.H., and Delleur, J.W., 1993,

A fast Fourier transform stochastic analysis of the contaminant transport problem: Water Resources Research, v. 29, no. 9, p. 3241-3248, 93WR01236, doi:10.1029/93WR01236.

Dillard, L.A., and Blunt, M.J., 2000,

Development of a pore network simulation model to study nonaqueous phase liquid dissolution: Water Resources Research, v. 36, no. 2, p. 439-454, 1999WR900301, doi:10.1029/1999WR900301.

Dillard, L.A., Essaid, H.I., and Blunt, M.J., 2001,

A functional relation for field-scale nonaqueous phase liquid dissolution developed using a pore network model: Journal of Contaminant Hydrology, v. 48, no. 1-2, p. 89-119, doi:10.1016/S0169-7722(00)00171-6.

Dillard, L.A., Essaid, H.I., and Herkelrath, W.N., 1997,

Multiphase flow modeling of a crude-oil spill site with a bimodal permeability distribution: Water Resources Research, v. 33, no. 7, p. 1617-1632, 97WR00857, doi:10.1029/97WR00857.

Engesgaard, P., and Kipp, K.L., 1992,

A geochemical transport model for redox-controlled movement of mineral fronts in groundwater flow systems--A case of nitrate removal by oxidation of pyrite: Water Resources Research, v. 28, no. 10, p. 2829-2843, 92WR01264, doi:10.1029/92WR01264.

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An interactive code (NETPATH) for modeling NET geochemical reactions along a flow PATH--Version 2.0: U.S. Geological Survey Water-Resources Investigations Report 94-4169, 130 p.

Plummer, L.N., Prestemon, E.C., and Parkhurst, D.L., 1991,

An interactive code (NETPATH) for modeling NET geochemical reactions along a flow PATH: U.S. Geological Survey Water-Resources Investigations Report 91-4078, 227 p.

Prudic, D.E., Konikow, L.F., and Banta, E.R., 2004,

A new streamflow-routing (SFR1) package to simulate stream-aquifer interaction with MODFLOW-2000: U.S. Geological Survey Open-File Report 2004-1042.

Runkel, R.L., 1998,

One dimensional transport with inflow and storage (OTIS)--A solute transport model for streams and rivers: U.S. Geological Survey Water-Resources Investigations Report 98-4018, 73 p.

Rutledge, A.T., and Helgesen, J.O., 1991,

A steady-state unsaturated-zone model to simulate pesticide transport: U.S. Geological Survey Water-Resources Investigations Report 90-4164, 13 p.

Stackelberg, P.E., and Siwiec, S.F., 1992,

Evaluation of statistical models to predict chemical quality of shallow ground water in the pine barrens of Suffolk County, Long Island, New York: U.S. Geological Survey Water-Resources Investigations Report 92-4100, 22 p.

Voss, C.E., 1984,

SUTRA, A finite-element simulation model for saturated-unsaturated, fluid-density-dependent ground-water flow with energy transport or chemically-reactive single-species solute transport: U.S. Geological Survey Water-Resources Investigations Report 84-4369, 409 p.

Vrabel, J., and Glynn, P.D., 1998,

PHRQCGRF - A computer program for graphical interpretation of PHREEQC geochemical transport simulations: U.S. Geological Survey Open-File Report 98-281, 30 p.

Wente, S.P., 2004,

A statistical model and national data set for partioning fish-tissue mercury concentration variation between spatiotemporal and sample characteristic effects: U.S. Geological Survey Scientific Investigations Report 2004-5199, 15 p.

Wershaw, R.L., 1992,

Membrane-micelle model for humus in soils and sediments and its relation to humification: U.S. Geological Survey Open-File Report 91-513, 64 p.

Winfield, K.A., 2005,

Development of property-transfer models for estimating the hydraulic properties of deep sediments at the Idaho National Engineering and Environmental Laboratory, Idahy: U.S. Geological Survey Scientific Investigations Report 2005-5114, 59 p.

Winston, R.B., 2006,

GoPhast--A graphical user interface for PHAST: U.S. Geological Survey Techniques and Methods 6-A20, 98 p.

Winston, R.B., 2001,

Programs for simplifying the analysis of geographic information in U.S. Geological Survey ground-water models: U.S. Geological Survey Open-File Report 01-392, 67 p.

Winston, R.B., 2000,

Graphical user interface for MODFLOW, version 4: U.S. Geological Survey Open-File Report 00-315, 27 p.

Winston, R.B., 1999,

Upgrade to MODFLOW-GUI--Addition of MODPATH ZONEBUDGET, and additional MODFLOW packages to the U.S. Geological Survey MODFLOW-96 graphical-user interface: U.S. Geological Survey Open-File Report 99-184, 64 p.

Winston, R.B., and Voss, C.I., 2003,

SutraGUI, a graphical interface for SUTRA, a model for ground-water flow with solute or energy transport: U.S. Geological Survey Open-File Report 2003-285, 114 p.

Zheng, C., Hill, M.C., and Hsieh, P.A., 2001,

MODFLOW-2000, the U.S. Geological Survey modular ground-water model--User guide to the LMT6 package, the linkage with MT3DMS for multi-species mass transport modeling: U.S. Geological Survey Open-File Report 01-82, 43 p.

Zinn, B.A., and Konikow, L.F., 2005,

MODFLOW data extractor program: U.S. Geological Survey Open-File Report 2005-1143, 7 p.

There are 225 publications in this section of the bibliography. The above list is sorted by publication type. There are 14 Books and Book Chapters, 39 Conference Proceedings Papers, 4 Fact Sheets, 90 Journal Articles, 2 Newsletter and Magazine Articles, 6 Reports (non-USGS)s, 10 Student Theses/Dissertations, and 60 Reports (USGS)s in this section of the bibliography. The Toxics Bibliographic Data Base was last updated on 4/30/08.

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