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Environmental Health - Toxic Substances

Bibliography

Development of Computer Simulation Models and Statistical Analysis Software, Publications, and Documentation

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Boyer, E.W., Hornberger, G.M., Bencala, K.E., and McKnight, D.M., 2000,
Effects of asynchronous snowmelt on flushing of dissolved organic carbon--A mixing model approach: Hydrological Processes, v. 14, no. 18, p. 3291-3308, doi:10.1002/1099-1085(20001230)14:18<3291::AID-HYP202>3.0.CO;2-2.

A

Hornberger, G.Z., and Konikow, L.F., 1998,
Addition of MOC3D solute-transport model capability to the U.S. Geological Survey MODFLOW-96 graphical-user interface using Argus open numerical environments: U.S. Geological Survey Open-File Report 98-188, 30 p.
Anderman, E.R., and Hill, M.C., 1997,
Advective-transport observation (ADV) package, a computer program for adding advective-transport observations of steady-state flow fields to the three-dimensional ground-water-flow parameter-estimation model MODFLOWP: U.S. Geological Survey Open-File Report 97-14, 67 p.
Hem, J.D., and Roberson, C.E., 1990,
Aluminum hydrolysis reactions and products in mildly acidic aqueous systems, in Melchior, D.C., and Bassett, R.L., eds., Chemical Modeling of Aqueous Systems II: Washington, D.C., American Chemical Society ACS Symposium Series 416, p. 429-446.
Runkel, R.L., McKnight, D.M., and Andrews, E.D., 1998,
Analysis of transient storage subject to unsteady flow--Diel flow variation in an Antarctic stream: Journal of North American Benthological Society, v. 17, no. 2, p. 143-154.
Moench, A.F., and Kharaka, Y.K., 2001,
Analytical model for deep well injection of cold brine into a hot aquifer, in Cidu, R., ed., Proceedings of the Tenth International Symposium WRI-10, Villasimius, Italy, June 10-15, 2001: A.A. Balkema, v. 1, p. 193-196.
Plummer, L.N., and Parkhurst, D.L., 1990,
Application of the Pitzer Equations to the PHREEQE geochemical model, in Melchoir, D.C., and Bassett, R.L., eds., Chemical modeling of aqueous systems II: Washington, D.C., American Chemical Society ACS Symposium Series 416, p. 128-137.
Baehr, A.L., and Bruell, C.J., 1990,
Application of the Stefan-Maxwell equations to determine limitations of Fick's Law when modeling organic vapor transport in sand columns: Water Resources Research, v. 26, no. 6, p. 1155-1163, doi:10.1029/WR026i006p01155.
Manteuffel, T.A., Grove, D.B., and Konikow, L.F., 1983,
Application of the conjugate-gradient method to ground-water model: U.S. Geological Survey Water-Resources Investigations Report 83-4009, 24 p.
Konikow, L.F., 2010,
Applying dispersive changes to lagrangian particles in groundwater transport models: Transport in Porous Media, v. 85, no. 2, p. 437-449, doi:10.1007/s11242-010-9571-2.
Davis, J.A., Meece, D.E., Kohler, M., and Curtis, G.P., 2004,
Approaches to surface complexation modeling of uranium(VI) adsorption on aquifer sediments: Geochimica et Cosmochimica Acta, v. 68, p. 3621-3641, doi:10.1016/j.gca.2004.03.003.
Nordstrom, D.K., and Archer, D.G., 2003,
Arsenic thermodynamic data and environmental geochemistry, in Welch, A.H., and Stollenwerk, K.G., eds., Arsenic in ground water--Geochemistry and Occurrence: Boston, Kluwer Academic Publishers, p. 1-25.
Shi, X., Ye, M., Curtis, G.P., Miller, G.L., Meyer, P.D., Kohler, M., Yabusaki, S., and Wu, J., 2014,
Assessment of parametric uncertainty for groundwater reactive transport modeling: Water Resources Research, v. 50, no. 5, p. 4416-4439, doi:10.1002/2013WR013755.
Liu, S., Yen, S., and Kolpin, D.W., 1996,
Atrazine concentrations in near-surface aquifers--A censored regression approach: Journal of Environmental Quality, v. 25, no. 5, p. 992-999, doi:10.2134/jeq1996.00472425002500050010x.
Scott, D.T., Gooseff, M.N., Bencala, K.E., and Runkel, R.L., 2003,
Automated calibration of a stream solute transport model--Implications for interpretation of biogeochemical parameters: Journal of the North American Benthological Society, v. 22, no. 4, p. 492-510.
Majure, J.J., and Eash, D.A., 1991,
An automated method to quantify physical basin characteristics, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 558-561.
Troutman, B.M., and Karlinger, M.R., 1986,
Averaging properties of channel networks using methods in stochastic branching theory, in Gupta, V.K., Rodriguez-Iturbe, I., and Wood, E.F., eds., Scale problems in hydrology--Runoff generation and basin response, Symposium, Proceedings, Princeton, New Jersey, October 30-November 3, 1984: Dordrecht, Netherlands, D. Reidel Publishing Co., p. 185-216.

C

Sanford, W.E., Wood, W.W., and Councell, T.B., 1992,
Calcium chloride-dominated brines--An ion-exchange model, in Kharaka, Y.K., and Maest, A.S., eds., Low temperature environments, v. 1 of Water-rock interaction--Proceedings of the 7th International Symposium on Water-Rock Interaction--WRI-7, Park City, Utah, July 13-18, 1992: Rotterdam, A.A. Balkema, p. 669-672.
Thorstenson, D.C., and Parkhurst, D.L., 2004,
Calculation of individual isotope equilibrium constants for geochemical reactions: Geochimica et Cosmochimica Acta, v. 68, no. 11, p. 2449-2465, doi:10.1016/j.gca.2003.11.027.
Ellefsen, K.J., 2000,
check_picks_x -- A program for checking the travel time picks of crosswell seismic and radar data: U.S. Geological Survey Open-File Report 00-109.
Landkamer, L.L., Harvey, R.W., Scheibe, T.D., and Ryan, J.N., 2013,
Colloid transport in saturated porous media--Elimination of attachment efficiency in a new colloid transport model: Water Resources Research, v. 49, no. 5, p. 2952-2965, doi:10.1002/wrcr.20195.
Moench, A.F., 1995,
Combining the Neuman and Boulton models for flow to a well in an unconfined aquifer: Ground Water, v. 33, no. 3, p. 378-384, doi:10.1111/j.1745-6584.1995.tb00293.x.
Hsieh, P.A., and Cooley, R.L., 1995,
Comment on "Horizontal aquifer movement in a theis-theim confined system, by Donald C. Helm: Water Resources Research, v. 31, no. 12, p. 3,101-3,111, 95WR02713, doi:10.1029/95WR02713.
Nimmo, J., 1991,
Comment on the treatment of residual water content in "A consistent set of parametric models for the two-phase flow of immiscible fluids in the subsurface" by L. Luckner et al: Water Resources Research, v. 27, no. 4, p. 661-662, 91WR00165, doi:doi:10.1029/91WR00165.
Bekins, B.A., Warren, E., and Godsy, E.M., 1997,
Comparing zero and first order approximations to the Monod Model, in Alleman, B.C., and Leeson, A., eds., In Situ and On Site Bioremediation--Procedings of the Fourth International Symposium on In Situ And On-Site Bioremediation, New Orleans, La., April 28-May 1, 1997: Columbus, Ohio, Battelle Press, v. 5, p. 547-552 (Contact The Conference Group Inc. for information on the availability of the proceedings.).
Stannard, D.I., 1993,
Comparison of Penman-Monteith, Shuttleworth-Wallace, and modified Priestley-Taylor evapotranspiration models for wildland vegetation in semiarid rangeland: Water Resources Research, v. 29, no. 5, p. 1379-1392, 93WR00333, doi:10.1029/93WR00333.
Curtis, G.P., 2003,
Comparison of approaches for simulating reactive solute transport involving organic degradation reactions by multiple terminal electron acceptors: Computers and Geosciences, v. 29, no. 3, p. 319-329, doi:10.1016/S0098-3004(03)00008-6.
Curtis, G.P., Fox, P., Kohler, M., and Davis, J.A., 2004,
Comparison of in situ uranium K D values with a laboratory determined surface complexation model: Applied Geochemistry, v. 19, p. 1643-1653, doi:10.1016/j.apgeochem.2004.03.004.
Bekins, B.A., Warren, E., and Godsy, E.M., 1998,
A comparison of zero-order, first-order, and Monod biotransformation models: Ground Water, v. 36, no. 2, p. 261-268, doi:10.1111/j.1745-6584.1998.tb01091.x.
Abrams, R.H., 1999,
A compartmentalized approach to simulating redox zones in contaminated aquifers: Stanford, Calif., Stanford University, Department of Geological and Environmental Sciences, unpublished Ph.D. thesis, 182 p.
Abrams, R.H., and Loague, K., 2000,
A compartmentalized solute transport model for redox zones in contaminated aquifers--1, Theory and development: Water Resources Research, v. 36, no. 8, p. 2001-2013, 2000WR900110, doi:10.1029/2000WR900110.
Abrams, R.H., and Loague, K., 2000,
A compartmentalized solute transport model for redox zones in contaminated aquifers--2, Field-scale simulations: Water Resources Research, v. 36, no. 8, p. 2015--2029, 10.1029/2000WR900111, doi:10.1029/2000WR900111.
Palandri, J.L., and Kharaka, Y.K., 2004,
A compilation of rate parameters of water-mineral interaction kinetics for application to geochemical modeling: U.S. Geological Survey Water-Resources Investigations Report 2004-1068, 64 p.
Corapcioglu, M.Y., and Baehr, A.L., 1987,
A compositional multiphase model for groundwater contamination by petroleum products--1, Theoretical considerations: Water Resources Research, v. 23, no. 1, p. 191-200, 6W4404, doi:10.1029/WR023i001p00191.
Baehr, A.L., and Corapcioglu, M.Y., 1987,
A compositional multiphase model for groundwater contamination by petroleum products--2, numerical solution: Water Resources Research, v. 23, no. 1, p. 201-213, doi:10.1029/WR023i001p00201.
Moench, A.F., 1993,
Computation of type curves for flow to partially penetrating wells in water-table aquifers: Ground Water, v. 31, no. 6, p. 966-971, doi:10.1111/j.1745-6584.1993.tb00870.x.
Uncles, R.J., and Peterson, D.H., 1995,
A computer model of long-term salinity in San Francisco Bay--Sensitivity to mixing and inflows: Environmental International, v. 21, no. 5, p. 647-656.
Grove, D.B., and Stollenwerk, K.G., 1984,
Computer model of one-dimensional equilibrium controlled sorption processes: U.S. Geological Survey Water-Resources Investigations Report 84-4059, 37 p.
Day-Lewis, F.D., Person, M.A., and Konikow, L.F., 1995,
A computer program (MACPUMP) for interactive aquifer-test analysis: U.S. Geological Survey Water-Resources Investigations Report 95-4012, 32 p.
Day-Lewis, F.D., Johnson, C.D., Paillet, F.L., and Halford, K.J., 2011,
A computer program for flow-log analysis of single holes (FLASH): Ground Water, v. 49, no. 6, p. 926-931, doi:10.1111/j.1745-6584.2011.00798.x.
Heppner, C.S., and Nimmo, J.R., 2005,
A computer program for predicting recharge with a master recession curve: U.S. Geological Survey Scientific Investigations Report 2005-5172, 8 p.
Plummer, L.N., Parkhurst, D.L., Fleming, G.W., and Dunkle, S.A., 1988,
A computer program incorporating Pitzer's equations for calculation of geochemical reactions in brines: U.S. Geological Survey Water-Resources Investigations Report 88-4153, 310 p.
Hsieh, P.A., Bahr, J.M., Doe, T.W., Flint, A.L., Gee, G., Gelhar, L.W., Solomon, D.K., Van Genuchten, M.T., and Wheatcraft, S.W., 2001,
Conceptual models of flow and transport in the fractured vadose zone: Washington, D.C., National Academy Press, 392 p., ISBN:978-0-309-07302-8.
Moench, A.F., 1989,
Convergent radial dispersion--A Laplace transform solution for aquifer tracer testing: Water Resources Research, v. 25, no. 3, p. 439-447, 88WR04117, doi:10.1029/WR025i003p00439.
Moench, A.F., 1991,
Convergent radial dispersion--A note on evaluation of the Laplace transform solution: Water Resources Research, v. 27, no. 12, p. 3261-3264, 91WR02301, doi:10.1029/91WR02301.
Curtis, G.P., Cozzarelli, I.M., Baedecker, M.J., and Bekins, B.A., 1999,
Coupled biogeochemical modeling of ground water contamination at the Bemidji, Minnesota, crude oil spill site, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 153-158.

D

Kipp, K.L., Russell, T.F., and Otto, J.S., 1992,
D4Z--A new renumbering for iterative solution of ground-water flow and solute-transport equations, in Russell, T.F., and others, eds., Computational methods in water resources IX, v. 1. Numerical methods in water resources: Boston, Computational Mechanics Publications, p. 495-502.
Pabich, W.J., 2001,
Denitrification of anthropogenic nitrogen in groundwater--Measurement and modeling using stable isotopic and mass balance approaches: Cambridge, Massachusetts Institute of Technology, Department of Civil and Environmental Engineering, unpublished Ph.D. thesis, 188 p.
Parkhurst, D.L., and Appelo, C.A.J., 2013,
Description of input and examples for PHREEQC version 3--A computer program for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations: U.S. Geological Survey Techniques and Methods 6-A43, xx, 497 p.
Broshears, R.E., Runkel, R.L., and Kimball, B.A., 1994,
Development and application of a reactive solute transport model for trace metals in mountain streams, in Dutton, A.R., ed., Toxic Substances and the Hydrologic Sciences--Proceedings of the conference, Austin, Texas, April 10-13, 1994: Minneapolis, Minn., American Institute of Hydrology, p. 19-34.
Runkel, R.L., 1993,
Development and application of an equilibrium-based simulation model for reactive solute transport in small streams: Boulder, University of Colorado, unpublished Ph.D. dissertation, 202 p.
Abrams, R.H., Loague, K., and Kent, D.B., 1998,
Development and testing of a compartmentalized reaction network model for redox zones in contaminated aquifers: Water Resources Research, v. 34, no. 6, p. 1531-1541, 98WR00485, doi:10.1029/98WR00485.
Gandhi, N., Bhavsar, S.P., Diamond, M.L., Kuwabara, J.S., Marvin-DiPasquale, M., and Krabbenhoft, D.P., 2007,
Development of a mercury speciation, fate and biotic uptake (BIOTRANSPEC) model--Application to Lahontan Reservoir (Nevada, USA): Environmental Toxicology and Chemistry, v. 26, no. 11, p. 2,260-2,273, doi:10.1897/06-468R.1.
Brown, D.W., and Hem, J.D., 1984,
Development of a model to predict the adsorption of lead from solution on a natural streambed sediment: U.S. Geological Survey Water-Supply Paper 2187, 35 p.
Dillard, L.A., and Blunt, M.J., 2000,
Development of a pore network simulation model to study nonaqueous phase liquid dissolution: Water Resources Research, v. 36, no. 2, p. 439-454, 1999WR900301, doi:10.1029/1999WR900301.
Zhu, L., 2007,
The development of efficient numerical time-domain modeling methods for geophysical wave propagation: Storrs, University of Connecticut, PhD dissertation, 199 p.
Winfield, K.A., 2005,
Development of property-transfer models for estimating the hydraulic properties of deep sediments at the Idaho National Engineering and Environmental Laboratory, Idahy: U.S. Geological Survey Scientific Investigations Report 2005-5114, 59 p.
Bahr, J.M., and Rubin, J., 1987,
Direct comparison of kinetic and local equilibrium formulations for solute transport affected by surface reactions: Water Resources Research, v. 23, no. 3, p. 438-452, 6W4566, doi:10.1029/WR023i003p00438.
Friedel, M.J., 2001,
Documentation and verification of VST2D--A model for simulating transient, variably saturated, coupled water-heat-solute transport in heterogeneous, anisotropic, 2-dimensional, ground-water systems with variable fluid density: U.S. Geological Survey Water-Resources Investigations Report 00-4105, 2 fold-in oversize sheets and 124 p.
Joss, C.J., and Baehr, A.L., 1997,
Documentation of AIR2D, A computer code to simulate two-dimensional, axisymmetric air flow in the unsaturated zone: U.S. Geological Survey Open-File Report 97-588, 106 p.
Joss, C.J., and Baehr, A.L., 1995,
Documentation of AIR3D, An adaptation of the ground water flow code MODFLOW to simulate three-dimensional airflow in the unsaturated zone: U.S. Geological Survey Open-File Report 94-533, 154 p.
Lahvis, M.A., and Baehr, A.L., 1997,
Documentation of R-UNSAT, A computer model for the simulation of reactive transport in the unsaturated zone: U.S. Geological Survey Open-File Report 97-630, 104 p.
Hsieh, P.A., and Freckleton, J.R., 1993,
Documentation of a computer program to simulate horizontal-flow barriers using the modular three-dimensional finite-difference ground-water flow model: U.S. Geological Survey Open-File Report 92-477, 32 p.
Merritt, M.L., and Konikow, L.F., 2000,
Documentation of a computer program to simulate lake-aquifer interaction using the MODFLOW ground-water flow model and the MOC3D solute-transport model: U.S. Geological Survey Water-Resources Investigations Report 00-4167, 146 p.
Healy, R.W., and Ronan, A.D., 1996,
Documentation of computer program VS2DH for simulation of energy transport in variably saturated porous media--modification of the U.S. Geological Survey's computer program VS2DT: U.S. Geological Survey Water-Resources Investigations Report 96-4230, 36 p.

E

Presser, T.S., and Luoma, S.N., 2013,
Ecosystem-scale selenium model for the San Francisco Bay-Delta Regional Ecosystem Restoration Implementation Plan: San Francisco Estuary and Watershed Science, v. 11, no. 1, p. 1-39, jmie_sfews_11157.
Wellman, T.P., Shapiro, A.M., and Hill, M.C., 2009,
Effects of simplifying fracture network representation on inert chemical migration in fracture-controlled aquifers: Water Resources Research, v. 45, no. 1, W01416, doi:10.1029/2008WR007025.
Runkel, R.L., and Chapra, S., 1993,
An efficient numerical solution of the transient storage equations for solute transport in small streams: Water Resources Research, v. 29, no. 1, p. 211-215, 92WR02217, doi:10.1029/92WR02217.
Luoma, S.N., and Presser, T.S., 2009,
Emerging opportunities in management of selenium contamination: Environmental Science and Technology, v. 43, no. 22, p. 8483-8487, doi:10.1021/es900828h.
Cole, B.E., and Cloern, J.E., 1987,
An empirical model for estimating phytoplankton productivity in estuaries: Marine Ecology Progress Series, v. 36, p. 299-305.
Cloern, J.E., Grenz, C., and Vidergar-Lucas, L., 1995,
An empirical model of the phytoplankton chlorophyll/carbon ratio--The conversion factor between productivity and growth rate: Limnology and Oceanography, v. 40, no. 7, p. 1313-1321.
Appelo, C.A.J., and Parkhurst, D.L., 1998,
Enhancements to the geochemical model PHREEQC-1D transport and reaction kinetics, in Arehart, G.B., and Hulston, J.R., eds., Proceedings of the 9th International Symposium on Water-Rock Interaction (WRI-9), Rottersam: A.A. Balkema, p. 873-876.
Runkel, R.L., Bencala, K.E., and Broshears, R.E., 1996,
An equilibrium-based simulation model for reactive solute transport in small streams, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 775-780.
Karlinger, M.R., and Troutman, B.M., 1985,
Error bounds in cascading regressions: International Association of Mathematical Geology, v. 17, p. 287-295.
Cox, T.J., and Runkel, R.L., 2008,
Eulerian-Lagrangian numerical scheme for simulating advection, dispersion, and transient storage in streams and a comparison of numerical methods: Journal of Environmental Engineering, v. 134, no. 12, p. 996-1005, doi:10.1061/(ASCE)0733-9372(2008)134:12(996).
Stackelberg, P.E., and Siwiec, S.F., 1992,
Evaluation of statistical models to predict chemical quality of shallow ground water in the pine barrens of Suffolk County, Long Island, New York: U.S. Geological Survey Water-Resources Investigations Report 92-4100, 22 p.
Kohler, M., Curtis, G.P., Kent, D.B., and Davis, J.A., 1996,
Experimental investigation and modeling of uranium (VI) transport under variable chemical conditions: Water Resources Research, v. 32, no. 12, p. 3539-3551, 96WR02815, doi:10.1029/95WR02815.

F

Deng, F.-W., Cushman, J.H., and Delleur, J.W., 1993,
A fast Fourier transform stochastic analysis of the contaminant transport problem: Water Resources Research, v. 29, no. 9, p. 3241-3248, 93WR01236, doi:10.1029/93WR01236.
Smith, P.E., and Larock, B.E., 1993,
A finite-difference model for 3-D flows in bays and estuaries, in 1993 National Conference on Hydraulic Engineering, Proceedings, San Francisco, Calif., July 25-30, 1993: American Society of Civil Engineers, p. 6.
Russell, T.F., Heberton, C.I., Konikow, L.F., and Hornberger, G.Z., 2003,
A finite-volume ELLAM for three-dimensional solute-transport modeling: Ground Water, v. 41, no. 2, p. 258-272, doi:10.1111/j.1745-6584.2003.tb02589.x.
Healy, R.W., and Russell, T.F., 1993,
A finite-volume Eulerian-Lagrangian localized adjoint method for solution of the advection-dispersion equation: Water Resources Research, v. 29, no. 7, p. 2,399-2,413, 93WR00403, doi:10.1029/93WR00403.
Moench, A.F., 1996,
Flow to a well in a water-table aquifer--An improved Laplace transform solution: Ground Water, v. 34, no. 4, p. 593-596, doi:10.1111/j.1745-6584.1996.tb02045.x.
Garabedian, S.P., and Konikow, L.F., 1983,
Front-tracking model for convective transport in flowing ground water: U.S. Geological Survey Water-Resources Investigations Report 83-4034, 55 p.
Dillard, L.A., Essaid, H.I., and Blunt, M.J., 2001,
A functional relation for field-scale nonaqueous phase liquid dissolution developed using a pore network model: Journal of Contaminant Hydrology, v. 48, no. 1-2, p. 89-119, doi:10.1016/S0169-7722(00)00171-6.

G

See, R.B., Naftz, D.L., and Qualls, C.L., 1992,
GIS-assisted regression analysis to identify sources of selenium in streams: Water Resources Bulletin, v. 28, no. 2, p. 315-330, doi:10.1111/j.1752-1688.1992.tb03997.x.
Parkhurst, D.L., and Plummer, L.N., 1993,
Geochemical models (chapter 9), in Alley, W.M., ed., Regional Ground-Water Quality: New York, Van Nostrand Reinhold, p. 199-225.
Cravotta, C.A., III, Parkhurst, D.L., Means, B., McKenzie, R., Morris, H., and Arthur, W., 2010,
A geochemical module for "AMDTreat" to compute caustic quantity, effluent quality, and sludge volume, in Barnhisel, R.I., ed., Bridging Reclamation, Science and Community--2010 National Meeting of the American Society of Mining and Reclamation, Pittsburgh, Pa., June 5-11, 2010: Lexington, Ky., American Society of Mining and Reclamation, p. 1413-1436.
Parkhurst, D.L., 1997,
Geochemical mole-balance modeling with uncertain data: Water Resources Research, v. 33, no. 8, p. 1,957-1,970, 97WR01125, doi:10.1029/97WR01125.
Engesgaard, P., and Kipp, K.L., 1992,
A geochemical transport model for redox-controlled movement of mineral fronts in groundwater flow systems--A case of nitrate removal by oxidation of pyrite: Water Resources Research, v. 28, no. 10, p. 2829-2843, 92WR01264, doi:10.1029/92WR01264.
Winston, R.B., 2006,
GoPhast--A graphical user interface for PHAST: U.S. Geological Survey Techniques and Methods 6-A20, 98 p.
Winston, R.B., 2000,
Graphical user interface for MODFLOW, version 4: U.S. Geological Survey Open-File Report 00-315, 27 p.
Konikow, L.F., and Bredehoeft, J.D., 1992,
Ground-water models cannot be validated: Advances in Water Resources, v. 15, no. 1, p. 75-83, doi:10.1016/0309-1708(92)90033-X.
McKenzie, J.M., Voss, C.I., and Siegel, D.I., 2007,
Groundwater flow with energy transport and water-ice phase change--Numerical simulations, benchmarks, and application to freezing in peat bogs: Advances in Water Resources, v. 30, no. 4, p. 966-983, doi:10.1016/j.advwatres.2006.08.008.
Konikow, L.F., and Patten, E.P., Jr., 1985,
Groundwater forecasting, in Anderson, M.G., and Burt, T.P., eds., Hydrological forecasting: New York, John Wiley and Sons Ltd., p. 221-270.
Kipp, K.L., Jr., Hsieh, P.A., and Charlton, S.R., 2008,
Guide to the revised ground-water flowand heat transport simulator--HYDROTHERM -- Version 3: U.S. Geological Survey Techniques and Methods 6-A25, 160 p (On-line only).
Kipp, K.L., Jr., 1997,
Guide to the revised heat and solute transport simulator--HST3D, Version 2: U.S. Geological Survey Water-Resources Investigations Report 97-4157, 149 p.

H

Kipp, K.L., Hsieh, P.A., Hayba, D.O., and Ingebritsen, S.E., 2005,
HYDROTHERM--A simulator of two-phase ground-water flow and heat transport: International Ground Water Modeling Center Newsletter, v. 23, no. 3, p. 3.

I

Tiedeman, C.R., Hill, M.C., D'Agnese, F.A., and Faunt, C.C., 2001,
Identifying model parameters important to preductions for guiding hydrogeologic data collection, in Proceedings, MODFLOW-2001, Golden, Colorado, September 2001: p. 195-201.
Kipp, K.L., Jr., Konikow, L.F., and Hornberger, G.Z., 1998,
An implicit dispersive transport algorithm for the U.S. Geological Survey MOC3D solute-transport model: U.S. Geological Survey Water-Resources Investigations Report 98-4234, 54 p.
Alexander, S.C., and Saar, M.O., 2012,
Improved characterization of small “u” for Jacob pumping test analysis methods: Ground Water, v. 50, no. 2, p. 256-265, doi:10.1111/j.1745-6584.2011.00839.x.
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Bekins, B.A., Cozzarelli, I.M., and Curtis, G.P., 2005,
A simple method for calculating growth rates of petroleum hydrocarbon plumes: Ground Water, v. 0, no. 0, doi:10.1111/j.1745-6584.2005.00093.x.
Nimmo, J.R., 2007,
Simple predictions of maximum transport rate in unsaturated soil and rock: Water Resources Research, v. 43, no. 5, W05426, doi:10.1029/2006WR005372.
Lahvis, M.A., and Baehr, A.L., 1998,
Simulating transport of volatile organic compounds in the unsaturated zone using the computer model R-UNSAT: U.S. Geological Survey Fact Sheet FS-019-98, 4 p.
Runkel, R.L., 1995,
Simulation models for conservative and nonconservative solute transport in streams, in Osterkamp, W.R., ed., Effects of scale on interpretation and management of sediment and water quality--Proceedings of the 1995 Meeting of the International Association of Hydrological Sciences, Boulder, Colorado, July 3-14, 1995: International Association of Hydrological Sciences IAHS Publication 225, p. 153-159.
Diodato, D.M., 1999,
Simulation of mass transport using the FracTran98 Module of FracSys2000, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 833-840.
Bencala, K.E., 1983,
Simulation of solute transport in a mountain pool and-riffle stream with a kinetic mass transfer model for sorption: Water Resources Research, v. 19, no. 3, p. 732-738, doi:10.1029/WR019i003p00732.
Bencala, K.E., and Walters, R.A., 2010,
Simulation of solute transport in a mountain pool-and-riffle stream--A transient storage model (Chap. F2), in Burt, T.P., Pinay, G., and Sabater, S., eds., Riparian Zone Hydrology and Biogeochemisty--IAHS Benchmark Papers in Hydrology Series no. 5: Wallingford, U.K., IAHS Press, ISBN:978-907161-09-4 (Reprinting of Bencala and Walters, 1983: Water Resources Research, v.19, p.718-724.).
Bencala, K.E., and Walters, R.A., 1983,
Simulation of solute transport in a mountain pool-and-riffle stream--A transient storage model: Water Resources Research, v. 19, no. 3, p. 718-724, doi:10.1029/WR019i003p00718.
Runkel, R.L., Kimball, B.A., Walton-Day, K., and Verplanck, P.L., 2007,
A simulation-based approach for estimating premining water quality--Red Mountain Creek, Colorado: Applied Geochemistry, v. 22, no. 9, p. 1899-1918, doi:10.1016/j.apgeochem.2007.03.054.
Runkel, R.L., and Restrepo, P.J., 1993,
Solute transport modeling under unsteady flow regimes--An application of the Modular Modeling Sytem, in Hon, K., ed., Water management in the `90s--A Time for Innovation--Proceedings of the 20th Anniversary Conference of the Water Resource Planning and Management Division of the American Society of Civil Engineers, Seattle, Wash., May 1-5, 1993: Washington, D.C., American Society of Civil Engineers, p. 256-259.
Rubin, J., 1990,
Solute transport with multisegment, equilibrium-controlled reactions--A feed forward simulation method: Water Resources Research, v. 26, no. 9, p. 2029-2055, doi:10.1029/WR026i009p02029.
Healy, R.W., and Russell, T.F., 1992,
Solution of the advection-dispersion equation by a finite-volume Eulerian-Langrangian local adjoint method, in Russell, T.F., Ewing, R.E., Brebbia, C.A., and Pinder, G.F., eds., Computational methods in water resources IX, v. 1. Numerical methods in water resources: Boston and London, Computational Mechanics Publications (Boston) and Elsevier (London), p. 33-39.
Casulli, V., and Cheng, R.T., 1994,
Solutions of primitive equations for three-dimensional tidal circulation, in Proceedings of the Third International Conference on Estuarine and Coastal Modeling, Chicago, Ill., September, 1993: American Society of Civil Engineers, p. 396-406.
Healy, R.W., and Russell, T.F., 1998,
Solutions of the advection-dispersion equation in two dimensions by a finite volume Eularian-Lagrangian localized adjoint method: Advances in Water Resources, v. 21, no. 1, p. 11-26.
Hsieh, P.A., 2002,
Some thoughts on modeling flow in fractured rocks: International Groundwater Modeling Center Newsletter, Spring 2002, p. 2.
Green, T.R., and Freyberg, D.L., 1995,
State-dependent anisotrophy--Comparison of quasi-analytical solutions with stochastic results for steady gravity drainage: Water Resources Research, v. 31, no. 9, p. 2201-2212, 95WR00790, doi:10.1029/95WR00790.
Wente, S.P., 2004,
A statistical model and national data set for partioning fish-tissue mercury concentration variation between spatiotemporal and sample characteristic effects: U.S. Geological Survey Scientific Investigations Report 2004-5199, 15 p.
Rutledge, A.T., and Helgesen, J.O., 1991,
A steady-state unsaturated-zone model to simulate pesticide transport: U.S. Geological Survey Water-Resources Investigations Report 90-4164, 13 p.
Rehmann, L.L.C., Welty, C., and Harvey, R.W., 1999,
Stochastic analysis of virus transport in aquifers: Water Resources Research, v. 35, no. 7, p. 1987-2006, 1999WR900059, doi:10.1029/1999WR900059.
Thompson, K.D., 1993,
The stochastic characterization of glacial aquifers using geologic information: Cambridge, Massachusetts Institute of Technology, Department of Civil and Environmental Engineering, unpublished Ph.D. thesis, 309 p.
Payne, T.e., Davis, J.A., Lumpkin, G.R., Chisari, R., and Waite, T.D., 2004,
Surface complexation model of uranyl sorption on Georgia kaolinite: Applied Clay Science, v. 26, p. 151-162, doi:10.1016/j.clay.2003.08.013.
Winston, R.B., and Voss, C.I., 2003,
SutraGUI, a graphical interface for SUTRA, a model for ground-water flow with solute or energy transport: U.S. Geological Survey Open-File Report 2003-285, 114 p.
Winston, R.B., and Voss, C.I., 2004,
SutraGUI--A graphical user interface for SUTRA, a model for ground-water flow with solute or energy transport: U.S. Geological Survey Open-File Report 03-285.
Paillet, F.L., and Barton, C.A., 1996,
The synthetic roadcut--A numerical technique for the multiple-scale integration of surface and borehole data, in Symposium on Application of Geophysics to Environmental and Engineering Problems, Keystone, Colorado, April 28-May 2, 1996: Englewood, Colo., Engineering and Environmental Geophysics Society, p. 823-83.
Jakeman, A.J., Hornberger, G.M., Littlewood, I.G., Whitehead, P.G., Harvey, J.W., and Bencala, K.E., 1992,
A systematic approach to modelling the dynamic linkage of climate, physical catchment descriptors, and hydrologic response components: Mathematics and Computers in Simulation, v. 33, p. 359-366, doi:10.1016/0378-4754(92)90122-W.

T

Casulli, V., Bertolazzi, E., and Cheng, R.T., 1993,
TRIM_3D--A three-dimensional model for accurate simulation of shallow water flow, in 1993 National Conference on Hydraulic Engineering, Proceedings, San Francisco, California, July, 1993: American Society of Civil Engineers, p. 1988-1993.
Andraski, B.J., and Jacobson, E.A., 2000,
Testing a full-range soil-water retention function in modeling water potential and temperature: Water Resources Research, v. 36, no. 10, p. 3081-3089, 2000WR900193, doi:10.1029/2000WR900193.
Goode, D.J., and Konikow, L.F., 1991,
Testing a method-of-characteristics model of three-dimensional solute transport in ground water, in Lennon, G.P., ed., Proceedings of the International Symposium on Ground Water in Practice, Nashville, Tenn., July 29-August 2, 1991: New York, American Society of Civil Engineers, p. 21-27.
Weatherill, D., Simmons, C.T., Voss, C.I., and Robinson, N.I., 2004,
Testing density-dependent groundwater models--Two-dimensional steady state unstable convection in infinite, finite and inclined porous layers: Advances in Water Resources, v. 27, no. 5, p. 547-562, doi:10.1016/j.advwatres.2004.01.003.
Solomon, D.K., Genereux, D.P., Plummer, L.N., and Busenberg, E., 2010,
Testing mixing models of old and young groundwater in a tropical lowland rain forest with environmental tracers: Water Resources Research, v. 46, no. 4, W04518, doi:10.1029/2009wr008341.
Chin, U.P., Weber, W.J., Jr., and Chiou, C.T., 1991,
A thermodynamic partition model for binding of nonionic organic compounds by organic colloids and implications for their sorption to soils and sediment, in Baker, R.A., ed., Humics and soils, v. 1 of Organic substances and sediments in water: Chelsea, Mich., Lewis Publishers, p. 251-273.
Kipp, K.L., Russell, T.F., and Otton, J.S., 1994,
Three-dimensional D4Z renumbering for iterative solution of ground-water flow and transport equations, in Peters, A., and others, eds., Computational methods in water resources X: Dordrecht, The Netherlands, Academic Publishers, v. 2, p. 1417-1424.
Voss, C., Simmons, C., and Robinson, N., 2010,
Three-dimensional benchmark for variable-density flow and transport simulation--Matching semi-analytic stability modes for steady unstable convection in an inclined porous box: Hydrogeology Journal, v. 18, no. 1, p. 5-23, doi:10.1007/s10040-009-0556-6.
Heberton, C.I., Russell, T.F., Konikow, L.F., and Hornberger, G.Z., 2000,
A three-dimensional finite-volume Euleiian-Lagrangian localized adjoint method (ELLAM) for solute-transport modeling: U.S. Geological Survey Water-Resources Investigations Report 00-4087, 63 p.
Heberton, C.I., Russell, T.F., Konikow, L.F., and Hornberger, G.Z., 2000,
Three-dimensional finite-volume F-LLAM implementation, in Bentley, and others, eds., Computational Methods in Water Resources: Rotterdam, A.A. Balkema, p. 603-610.
Konikow, L.F., Goode, D.J., and Hornberger, G.Z., 1996,
A three-dimensional method-of-characteristics solute-transport model (MOC3D): U.S. Geological Survey Water-Resources Investigations Report 96-4267, 87 p.
Cheng, R.T., Casulli, V., and Gartner, J.W., 1993,
Tidal, residual, intertidal mudflat (TRIM) model and its applications to San Francisco Bay, California: Estuarine, Coastal and Shelf Science, v. 36, p. 235-280, doi:10.1006/ecss.1993.1016.
Hsieh, P.A., 2001,
TopoDrive and ParticleFlow--Two computer models for simulation and visualization of ground-water flow and transport of fluid particles in two dimensions: U.S. Geological Survey Open-File Report 2001-286, 30 p.
Reinfelder, J.R., Fischer, N.S., Luoma, S.N., Nichols, J.W., and Wang, W.X., 1998,
Trace element trophic transfer in aquatic organisms--A critique of the kinetic model approach: The Science of the Total Environment, v. 219, no. 2-3, p. 117-135, doi:10.1016/S0048-9697(98)00225-3.
Nordstrom, D.K., 1996,
Trace metal speciation in natural waters--Computational vs. analytical: Water, Air, and Soil Pollution, v. 90, p. 257-267.
Willis, C., and Rubin, J., 1987,
Transport of reacting solutes subject to a moving dissolution boundary--Numerical methods and solutions: Water Resources Research, v. 28, no. 8, p. 1,561-1,574, 6W4588, doi:10.1029/WR023i008p01561.
Healy, R.W., and Russell, T.F., 2000,
Treatment of internal sources in the finite-volume ELLAM, in Proceedings of the XEEI International Conference on Computational Methods in Water Resources, Calgary, Alberta, June 25-29, 2000: p. 619-622.
Anderman, E.R., Hill, M.C., and Poeter, E.P., 1996,
Two-dimensional advective transport in ground-water flow parameter estimation: Ground Water, v. 34, no. 6, p. 1001-1009.
Anderman, E.R., Hill, M.C., and Poeter, E.P., 1994,
Two-dimensional advective transport in nonlinear regression--Sensitivities and uncertainty of plume-front observations, in Warner, J.W., and van der Heijde, P., eds., Proceedings, 1994 Groundwater Modeling Conference, Fort Collins, Colorado, August 10-12, 1994: Fort Collins, Colo., Colorado State University, p. 55-62.
Lahvis, M.A., 1993,
A two-dimensional vapor diffusion model for the unsaturated zone with applications to the Galloway Township, New Jersey hydrocarbon research site: Philadelphia, Pa., Drexel University, Department of Civil Engineering, unpublished Ph.D. dissertation, 204 p.

U

Baehr, A.L., and Joss, C.J., 1995,
An updated model of induced airflow in the unsaturated zone: Water Resources Research, v. 31, no. 2, p. 417-421, 94WR02423, doi:10.1029/94WR02423.
Winston, R.B., 1999,
Upgrade to MODFLOW-GUI--Addition of MODPATH ZONEBUDGET, and additional MODFLOW packages to the U.S. Geological Survey MODFLOW-96 graphical-user interface: U.S. Geological Survey Open-File Report 99-184, 64 p.
Green, T.R., Constantz, J.E., and Freyberg, D.L., 1996,
Upscaled soil-water retention using van Genuchten's function: Journal of Hydrologic Engineering, v. 1, no. 3, p. 123-130, doi:10.1061/(ASCE)1084-0699(1996)1:3(123).
Payne, T.E., Davis, J.A., Ochs, M., Olin, M., and Tweed, C.J., 2004,
Uranium adsorption on weathered schist--Intercomparison of modeling approaches: Radiochimica Acta, v. 92, p. 651-661.
Glynn, P.D., Engesgaard, P., and Kipp, K.L., 1991,
Use and limitations of two computer codes for simulating geochemical mass transport at the Pinal Creek toxic-waste site, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 454-460.
Baehr, A.L., and Baker, R.J., 1995,
Use of a reactive gas transport model to determine rates of hydrocarbon biodegradation in unsaturated porous media: Water Resources Research, v. 31, no. 11, p. 2877-2882, 95WR02077, doi:10.1029/95WR02077.
Rutledge, A.T., and Helgesen, J.O., 1989,
Use of a simplified transport model for pesticides in the unsaturated zone, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic-Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 523-530.
Anderman, E.R., 1996,
The use of advective-transport observations to improve ground-water flow parameter estimation: Golden, Colorado School of Mines, Department of Geology and Geological Engineering, unpublished Ph.D. thesis, 277 p.
Konikow, L.F., and Hornberger, G.Z., 2003,
Use of boundary fluxes when simulating solute transport with the MODFLOW ground-water transport process: U.S. Geological Survey Open-File Report 2003-303, 17 p.
Welty, C., and Baehr, A.L., Joss, C.J., and Dillow, J.J.A., 1991,
Use of mathematical programming coupled with a transport model to optimize the design of vapor-extraction systems, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 276-279.
Masterson, J.P., Walter, D.A., and Savoie, J., 1996,
Use of particle tracking to improve numerical model calibration and to analyze ground-water flow and contaminant migration, Massachusetts Military Reservation, Cape Cod, Massachusetts: U.S. Geological Survey Water-Supply Paper 2482, 50 p.
Konikow, L.F., and Hornberger, G.Z., 2006,
Use of the Multi-Node Well (MNW) package when simulating solute transport with the MODFLOW ground-water transport process: U.S. Geological Survey Techniques and Methods 6-A15, 34 p.
Parkhurst, D.L., and Appelo, C.A.J., 1999,
User's guide to PHREEQC--A computer program for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations: U.S. Geological Survey Water-Resources Investigations Report 99-4259, 312 p.
Parkhurst, D.L., 1995,
User's guide to PHREEQC--A computer program for speciation, reaction-path, advective-transport, and inverse geochemical calculations: U.S. Geological Survey Water-Resources Investigations Report 95-4227, 143 p.
Hsieh, P.A., and Winston, R.B., 2002,
User's guide to model viewer, a program for three-dimensional visualization of ground-water model results: U.S. Geological Survey Open-File Report 02-106, 18 p.
Konikow, L.F., Granato, G.E., and Hornberger, G.Z., 1994,
User's guide to revised method-of-characteristics solute-transport model (MOC--Version 3.1): U.S. Geological Survey Water-Resources Investigations Report 94-4115, 63 p.
Ball, J.W., and Nordstrom, D.K., 1991,
User's manual for WATEQ4F with revised thermodynamic data base and test cases for calculating speciation of major, trace and redoc elements in natural waters: U.S. Geological Survey Open-File Report 91-183, 185 p.
Runkel, R.L., 2000,
Using OTIS to model solute transport in streams and rivers: U.S. Geological Survey Fact Sheet 138-99, 4 p.

V

Hsieh, P.A., Wingle, W., and Healy, R.W., 2000,
VS2DTI - A graphical software package for simulating fluid flow and solute or energy transport in variably saturated porous media: U.S. Geological Survey Water-Resources Investigations Report 99-4130, 16 p.

W

Christian, S.B., 1992,
Well test analysis in a two-zone aquifer using the boundary integral method: Stanford, Calif., Stanford University, M.S. thesis.
Luoma, S.N., and Rainbow, P.S., 2005,
Why is metal bioaccumulation so variable? Biodynamics as a unifying concept: Environmental Science and Technology, v. 39, no. 7, p. 1921-1931, doi:10.1021/es048947e.

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