Applications of Computer Simulation Models to Solve Contamination Problems

Alpers, C.N., and Nordstrom, D.K., 1999,

Geochemical modeling of water-rock interactions in mining environments, in Plumlee, G.S., and Logsdon, M.J., eds., The environmental geochemistry of mineral deposits--Part 1. Processes, methods and health issues: Reviews in Economic Geology, v. 6A, p. 289-324.

Ball, J.W., Runkel, R.L., and Nordstrom, D.K., 2004,

Evaluating remedial alternatives for the Alamosa River and Wightman Fork, near Summitville Mine, Colorado--Application of a reactive transport model to low- and high-flow simulations, in Zannetti, P., ed., Environmental Sciences and Environmental Computing: The EnviroComp Institute, v. II, p. 1-54.

Bencala, K.E., Duff, J.H., Harvey, J.W., Jackman, A.P., and Triska, F.J., 1993,

Modelling within the stream-catchment continuum, in Jakeman, A.J., Beck, M.B., and McAleer, J.J., eds., Modelling Change in Environmental Systems: Wiley, p. 163-187.

Bencala, K.E., Duff, J.H., Harvey, J.W., Jackman, J.P., and Triska, F.J., 1993,

Physical transport influencing biogeochemistry within the stream catchment continuum, in Jakeman, A.J., Beck, M.B., and McAleer, M.J., eds., Modelling change in environmental systems: New York, J. Wiley and Sons.

Brown, J.G., Bassett, R.L., and Glynn, P.D., 1998,

Analysis and simulation of reactive transport of metal contaminants in ground water in Pinal Creek Basin, Arizona, in Steefel, C.I., and Van Cappellen, P., eds., Special Issue--Reactive Transport Modeling of Natural Systems: New York, Elsevier, Journal of Hydrology, v. 209, p. 225-250.

Choi, J., Hulseapple, S.M., Conklin, M.H., and Harvey, J.W., 1998,

Modeling CO2 degassing and pH in a stream-aquifer system, in Steefel, C.I., and Van Cappellen, P., eds., Special Issue--Reactive Transport Modeling of Natural Systems: New York, Elsevier, Journal of Hydrology, v. 209, p. 297-310.

Davis, J.A., and Kent, D.B., 1990,

Surface complexation modeling in aqueous geochmeistry, in Hochella, M.F., and White, A.F., eds., Mineral-water interface geochemistry--Reviews in mineralogy: Mineralogical Society of America, v. 23, p. 177-260.

Domenico, P.A., and Schwartz, F.W., 1990,

Case study in the application of a numerical model, in Domenico, P.A., and Schwartz, F.W., eds., Physical and chemical hydrogeology: New York, John Wiley and Sons, p. 665-670 (section 17.5), ISBN:047150744X.

Essaid, H.I., Herkelrath, W.N., and Dillard, L.A., 1994,

Field and modeling studies of multiphase fluid flow at the Bemidji, Minnesota crude-oil spill site, in Dutton, A.R., ed., Toxic Substances and the Hydrologic Sciences: Minneapolis, American Institute of Hydrology, p. 52-68.

Glynn, P.D., and Brown, J.G., 1996,

Reactive transport modeling of acidic metal-contaminated ground water at a site with sparse spatial information, in Lichtner, P.C., Steefel, C.I., and Oelkers, E.H., eds., Reactive Transport in Porous Media: Washington, D.C., Mineralogical Society of America, Reviews in Mineralogy, v. 34, p. 377--438.

Godsy, E.M., Goerlitz, D.F., and Grbic'-Galic', D., 1989,

Transport and degradation of water-soluble creosote-derived compounds, in Allen, D.T., ed., Intermedia pollutant transport--Modeling and field measurements: New York, Plenum Publishing, p. 112-143.

Harvey, R.W., 1991,

Parameters involved in modeling movement of bacteria in groundwater, in Hurst, C.J., ed., Modeling the environmental fate of microorganisms: Washington, D.C., American Society for Microbiology, p. 89-114.

Hill, M.C., and Tiedeman, C.R., 2007,

Effective groundwater model calibration--With analysis of data, sensitivities, predictions, and uncertainty: Hoboken, John Wiley and Sons, 455 p., ISBN:978-0-471-77636-9.

Hsieh, P.A., 2000,

A brief survey of hydraulic tests in fractured rocks, in Faybishenko, B., Witherspoon, P.A., and Benson, S.M., eds., American Geophysical Union Geophysical Monograph 122: Washington, D.C., p. 59-66.

Kimball, B.A., Runkel, R.L., and Walton-Day, K., 2003,

Use of field-scale experiments and reactive transport modeling to evaluate remediation alternatives in streams affected by acid mine drainage, in Jambor, J.L., Blowes, D.W., and Ritchie, A.I.M., eds., Environmental Aspects of Mine Wastes: Mineralogical Association of Canada, Short Course Series, v. 31, p. 261-282.

Konikow, L.F., 1995,

The value of postaudits in groundwater model applications, in El-Kadi, A.I., ed., Groundwater Models for Resources Analysis and Management: Boca Raton, Lewis Publishers, p. 59-78.

Konikow, L.F., and Glynn, P.D., 2005,

Modeling ground-water flow and quality, in Selinus, O., ed., Essentials of Medical Geology: Amsterdam, Elsevier, p. 737-765, ISBN:978-0-12-636341-8.

Konikow, L.F., and Patten, E.P., Jr., 1985,

Groundwater forecasting, in Anderson, M.G., and Burt, T.P., eds., Hydrological forecasting: New York, John Wiley and Sons Ltd., p. 221-270.

Konikow, L.F., and Reilly, T.E., 1998,

Groundwater modeling, in Delleur, J., ed., The Handbook of Groundwater Engineering: Boca Raton, CRC Press.

Konikow, L.F., Reilly, T.E., Barlow, P.M., and Voss, C.I., 2006,

Groundwater modeling (chapter 23), in Delleur, J.W., ed., The Handbook of Groundwater Engineering (2nd ed.): Boca Raton, CRC Press, ISBN:9780849343162.

Landkamer, L.L., Harvey, R.W., Metge, D.W., and Ryan, J.N., 2004,

Modeling microbial enhancement of Zn (II) and Pb (II) transport in columns packed with geologic media, in Wanty, R., and Seal, R., eds., Water Rock Interaction: Exton, Pennsylvania, A.A. Balkema, v. 2, p. 1139-1140.

Luoma, S.N., 1995,

Prediction of metal toxicity in nature for bioassays--Limitations and research needs, in Tessier, A., and Turner, D., eds., Metal speciation and bioavailability in aquatic systems: New York, John Wiley and Sons, p. 609-659.

McDonald, E.T., and Cheng, R.T., 1994,

Issues related to modeling the transport of suspended sediments in northern San Francisco Bay, California, in The proceedings of the Third International Conference on Estuarine and Coastal Modeling: Chicago, Illinois, American Society of Civil Engineers, p. 551-564.

Mendez, E., Widdowson, M., Brauner, S., Chapelle, F., and Casey, C., 2004,

Natural attenuation software (NAS)--A computer program for estimating remediation times of contaminated groundwater, in Latini, G., Passerini, G., and Brebbia, C., eds., Development and Application of Computer Techniques to Environmental Studies X: WIT Press, p. 185-194, ISBN:1-85312-718-3.

Nordstrom, D.K., 2003,

Modeling low-temperature geochemical processes (chapter 2), in Drever, J.I., ed., Treatise on Geochemistry: Elsevier, v. 5 of 10 volumes, p. 1-38, ISBN:9780080437514.

Nordstrom, D.K., and Archer, D.G., 2003,

Arsenic thermodynamic data and environmental geochemistry, in Welch, A.H., and Stollenwerk, K.G., eds., Arsenic in ground water--Geochemistry and Occurrence: Boston, Kluwer Academic Publishers, p. 1-25.

Packman, A.I., and Bencala, K.E., 2000,

Modeling surface - subsurface hydrologic interactions, in Jones, J.B., and Mulholland, P.J., eds., Streams and Ground Waters: Academic Press, p. 45-80.

Paillet, F.L., 1999,

Characterizing fractured-zone flow using numerical flow-log models, in Amadei, B., Kranz, R.L., Scott, G.A., and Smeallie, P.H., eds., Rock Mechanics for Industry--Proceedings of the 37th U.S. Rock Mechanics Symposium, June 6-9, 1999: Rotterdam, Netherlands, A.A. Balkema, v. 2, p. 819-826.

Parkhurst, D.L., and Plummer, L.N., 1993,

Geochemical models (chapter 9), in Alley, W.M., ed., Regional Ground-Water Quality: New York, Van Nostrand Reinhold, p. 199-225.

Peterson, D.H., Cayan, D.R., Dettinger, M.D., Noble, M., Riddle, L.G., Schemel, L.E., Smith, R.E., Uncles, R.J., and Walters, R., 1996,

San Francisco Bay salinity--Observations, numerical simulation, and statistical models, in Hollibaugh, J.T., ed., San Francisco Bay--The ecosystem: San Francisco, American Association for the Advancement of Science, Pacific Division, p. 9-34.

Presser, T.S., Piper, D.Z., Bird, K.J., Skorupa, J.P., Hamilton, S.J., Detwiler, S.J., and Huebner, M.A., 2004,

The Phosphoria Formation--A model for forecasting global selenium sources to the environment, in Hein, J., ed., Life Cycle of the Phosphoria Formation--From Deposition to the Post-Mining Environment: Amsterdam, Elsevier, p. 299-319.

Smith, K.S., Ranville, J.F., Plumlee, G.S., and Macalady, D.L., 1998,

Predictive double-layer modeling of metal sorption in mine-drainage systems, in Jenne, E.A., ed., Adsorption of metals by geomedia--variables, mechanisms, and model applications: San Diego, Calif., Academic Press, p. 521-547.

Smith, R.L., and Garabedian, S.P., 1998,

Using transport model interpretations of tracer tests to study microbial processes in groundwater, in Koch, A.L., Robinson, J.A., and Milliken, G.A., eds., Mathematical modeling in microbial ecology: New York, Chapman and Hall, p. 94-123.

Solomon, D.K., Cook, P.G., and Plummer, L.N., 2006,

Models of groundwater ages and residence times (chapter 6), in IAEA, ed., Use of chlorofluorocarbons in hydrology--A guidebook: Vienna, International Atomic Energy Agency, p. 73-88.

Stollenwerk, K.G., 2003,

Geochemical processes controlling transport of arsenic in groundwater--A review of adsorption, in Welch, A.H., and Stollenwerk, K.G., eds., Arsenic in ground water--Geochemistry and occurrence: Boston, Kluwer Academic Publishers, p. 67-100.

Stollenwerk, K.G., and Colman, J.A., 2003,

Natural remediation potential of arsenic-contaminated ground water, in Welch, A.H., and Stollenwerk, K.G., eds., Arsenic in Groundwater--Geochemistry and Occurrence: Boston, Kluwer Academic Press, p. 351-379.

Tiedeman, C.R., and Hsieh, P.A., 2003,

Evaluation of longitudinal dispersivity estimates from forced-gradient tracer tests in heterogeneous aquifers, in Kovar, K., and Zbynek, H., eds., Calibration and Reliability in Groundwater Modelling--A Few Steps Closer to Reality: IAHS Publication 277, p. 168-174.

Versteeg, D.J., Alder, A.C., Cunningham, V.L., Kolpin, D.W., Murray-Smith, R., and Ternes, T., 2005,

Environmental exposure modeling and monitoring of human pharmaceutical concentrations in the environment, in Williams, R.T., ed., Human pharmaceuticals - assessing the impacts on aquatic ecosystems: SETAC Press, p. 71-110, ISBN:978-1-880611-82-1.

Welch, A.H., Stollenwerk, K.G., Maurer, D.K., and Feinson, L.S., 2003,

In situ arsenic remediation in a fractured, alkaline aquifer, in Welch, A.H., and Stollenwerk, K.G., eds., Arsenic in ground water--Geochemistry and occurrence: Boston, Kluwer Academic Publishers, p. 403-419.

Welch, A.H., and Stollenwerk, K.G., eds., 2003,

Arsenic in ground water--Geochemistry and occurrence: Boston, Kluwer Academic Publishers, 475 p., ISBN:978-1-4020-7317-5,

Winter, T.C., 1984,

Modeling the interrelationship of ground water and surface water, in Schnoor, J.L., ed., Modeling of total acid precipitation impacts: Boston, Mass., Butterworth Publishers, p. 89-119.

Anderman, E.R., Hill, M.C., and Poeter, E.P., 1994,

Two-dimensional advective transport in nonlinear regression--Sensitivities and uncertainty of plume-front observations, in Warner, J.W., and van der Heijde, P., eds., Proceedings, 1994 Groundwater Modeling Conference, Fort Collins, Colorado, August 10-12, 1994: Fort Collins, Colo., Colorado State University, p. 55-62.

Andraski, B.J., 1996,

Simulated trench studies near Beatty, Nevada-Initial results and implications, in Stevens, P.R., and Nicholson, T.J., eds., Joint U.S. Geological Survey, U.S. Nuclear Regulatory Commission Workshop on research related to low-level radioactive waste disposal, May 4-6, 1993, National Center, Reston, Virginia, Proceedings: U.S. Geological Survey Water-Resources Investigations Report 95-4015, p. 111-118.

Andraski, B.J., 1990,

Water movement and trench stability at a simulated arid burial site for low-level radioactive waste near Beatty, Nevada, in Nuclear Waste Isolation in the Unsaturated Zone, Proceedings, Las Vegas, Nevada, September, 1989: La Grange Park, Ill., American Nuclear Society, p. 166-173.

Angeroth, C.E., Leake, S.A., and Wagner, B.J., 1999,

Preliminary model development of the ground- and surface-water system in Pinal Creek Basin, Arizona, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 211-216.

Asmussen, L.E., and Smith, C.N., 1990,

Study design to investigation and simulate agrichemical movement and fate in ground-water recharge, in Nash, R.G., and Leslie, A.R., eds., Ground water research and sampling design: Washington, D.C., American Chemical Society ACS Symposium Series 465, p. 150-164.

Baedecker, M.J., and Cozzarelli, I.M., 1991,

Geochemical modeling of organic degradation reactions in an aquifer contaminated with crude oil, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 627-632.

Baehr, A.L., and Hult, M.F., 1987,

Mathematical modeling of hydrocarbon and oxygen transport coupled with microbial degradation in the unsaturated zone, in Franks, B.J., ed., U.S. Geological Survey Program on Toxic Waste--Ground-Water Contamination--Proceedings of the third technical meeting, Pensacola, Florida, March 23-27, 1987: U.S. Geological Survey Open-File Report 87-109, p. C-27-C-28.

Baker, R.J., and Baehr, A.L., 1996,

Use of column studies and a reactive transport model to measure biodegradation rates of hydrocarbons, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 43-47.

Ball, J.W., Nordstrom, D.K., and Runkel, R.L., 2000,

Reactive and non-reactive transport modeling for Wightman Fork, Summitville Mine, Colorado--Application of the OTIS/OTEQ model to a low-flow synoptic study, in Proceedings from the Fifth International Conference on Acid Rock Drainage, Denver, Colorado, May 21-24, 2000: Littleton, Colo., Society for Mining, Metallurgy, and Exploration, v. 1 of 2, p. 125-134.

Ball, J.W., Runkel, R.L., and Nordstrom, D.K., 2001,

Reactive transport modeling at high-flow - Wightman Fork/Alamosa River, USA, in Cidu, R., ed., Proceedings of the Tenth International Symposium on Water - Rock Interaction, Villasimius, Italy, July 10-15, 2001: A.A. Balkema Publishers, v. 2, p. 1181-1184.

Ball, J.W., Runkel, R.L., and Nordstrom, D.K., 1999,

Transport modeling of reactive and non-reactive constituents from Summitville, Colorado--Preliminary results from the application of the OTIS/OTEQ model to the Wightman Fork/Alamosa River System, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 305-311.

Battaglin, W.A., and Goolsby, D.A., 1996,

Using GIS and logistic regression to estimate agricultural chemical concentrations in rivers of the midwestern USA, in Kovar, K., and Nachtnebel, H., eds., Application of Geographic Information Systems in Hydrology and Water Resources Management--Proceedings of HydroGIS'96 meeting, Vienna, Austria, April, 1996: International Association of Hydrological Sciences IAHS Publication No. 235, p. 253-260.

Battaglin, W.A., and Goolsby, D.A., 1996,

Using GIS and regression to estimate annual herbicide concentrations in outflow from reservoirs in the midwestern USA, 1992-93, in AWRA Symposium on GIS and Water Resources, Ft. Lauderdale, FL, September 22-26, 1996: American Water Resources Association.

Battaglin, W.A., and Goolsby, D.A., 1996,

Using GIS and regression to estimate annual herbicide concentrations in outflow from reservoirs in the midwestern USA, 1992-93, in Hallam, C.A., Salisbury, H.M., Lanfear, K.J., and Battaglin, W.A., eds., GIS and Water Resources--Proceedings of the American Water Resources Association: American Water Resources Association Technical Publication Series TPS-96-3, p. 89-98.

Bekins, B.A., Godsy, E.M., and Goerlitz, D.F., 1996,

Modeling steady-state methanogenic degradation of phenols in ground water at Pensacola, Florida, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 843-849.

Bekins, B.A., Godsy, E.M., and Goerlitz, D.F., 1994,

Modeling steady-state methanogenic degradation of phenols in groundwater at Pensacola, Florida, in Symposium on bioremediation of hazardous wastes--Research, development, and field evaluations: Washington, D.C., Office of Research and Development, U.S. Environmental Protection Agency Environmental Research Brief EPA/600/R-94/075, p. 158-163.

Bekins, B.A., Warren, E., and Godsy, E.M., 1997,

Comparing zero and first order approximations to the Monod Model, in Alleman, B.C., and Leeson, A., eds., In Situ and On Site Bioremediation--Procedings of the Fourth International Symposium on In Situ And On-Site Bioremediation, New Orleans, La., April 28-May 1, 1997: Columbus, Ohio, Battelle Press, v. 5, p. 547-552 (Contact The Conference Group Inc. for information on the availability of the proceedings.).

Besser, J.M., and Leib, K.J., 1999,

Modeling frequency of occurrence of toxic concentrations of zinc and copper in the Upper Animas River, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 75-81.

Boyer, E.W., Hornberger, G.W., and Bencala, K.E., 1993,

Hydrological controls on the temporal variation of dissolved organic carbon in Deer Creek near Montezuma, Colorado, in McAleer, M., and Jakeman, A., eds., Proceedings of the 10th Biennial Conference of the Modeling and Simulation Society of Australia, December 6-10, 1993: The University of Western Australia, p. 501-506.

Brauner, J.S., and Widdowson, M.A., 1997,

Sequential electron acceptor model for evaluation of in situ bioremediation of petroleum hydrocarbon contaminants in groundwater, in Engineering Foundation Conference on Bioremediation, Palm Coast, Florida, January 21-26, 1996: Annals of the New York Academy of Sciences, v. 829, p. 399-419.

Broshears, R.E., Kimball, B.A., and Runkel, R.L., 1996,

Simulation of reactive transport during a pH modification experiment in a mountain stream affected by acid mine drainage, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 781-788.

Broshears, R.E., Runkel, R.L., and Kimball, B.A., 1994,

Development and application of a reactive solute transport model for trace metals in mountain streams, in Dutton, A.R., ed., Toxic Substances and the Hydrologic Sciences--Proceedings of the conference, Austin, Texas, April 10-13, 1994: Minneapolis, Minn., American Institute of Hydrology, p. 19-34.

Brown, J.G., Glynn, P.D., and Bassett, R.L., 1999,

Geochemistry and reactive-transport of metal contaminants in ground water, Pinal Creek Basin, Arizona, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 141-153.

Chang, F.H., Bullert, J., and Denzin, B., 1990,

Effect of environmental parameters on biodegradation of crude oil and model hydrocarbon in groundwater environment, in Flierman, C.B., and Hazen, T.C., eds., Proceedings of the First International Symposium on Microbiology of the Deep Subsurface, Orlando, Fla., January 15-18, 1990: p. 7-53-7-65.

Chang, F.H., Hult, M., and Noben, N.N., 1987,

Quantitative studies of biodegradation of petroleum and some model hydrocarbons in ground water and sediment environments, in Fairchild, D.M., ed., National Conference on Ground-Water Quality and Agricultural Practices--Proceedings of Ground-Water Quality and Agricultural Practices, Norman Okla., May 1-2, 1986: Chelsea, Mich., Lewis Publishers, p. 295-318.

Chang, F.H., Noben, N.N., Brand, D., and Hult, M.F., 1988,

Microbial degradation of crude oil and some model hydrocarbons, in Ragone, S.E., ed., U.S. Geological Survey Program on Toxic Waste--Ground-Water Contamination--Proceedings of the second technical meeting, Cape Cod, Massachusetts, October 21-25, 1985: U.S. Geological Survey Open-File Report 86-481, p. C-33-C-42.

Cho, H.J., Smith, J.A., and Jaffé, P.R., 1996,

Simulation of trichloroethylene volatilization in the unsaturated zone during a field infiltration experiment at Picatinny Arsenal, New Jersey, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 315-320.

Christensen, F.D., Engesgaard, P., and Kipp, K.L., 2001,

A reactive transport investigation of seawater intrusion experiment in a shallow aquifer, Skansehage, Denmark, in Proceedings of the First International Conference on Saltwater Intrusion and Coastal Aquifers, Essaouira, Morocco, April 23-35, 2001.

Church, C.D., Tratnyek, P.G., Pankow, J.F., Landmeyer, J.E., Baehr, A.L., Thomas, M.A., and Schirmer, M., 1999,

Effects of environmental conditions on MTBE degradation in model column aquifers, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 93-101.

Cunningham, K.M., and Goldberg, M.C., 1989,

A model for photolytic decomposition of toxic materials adsorbed onto iron oxyhydroxides in surface waters, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 608.

Curtis, G.P., Cozzarelli, I.M., Baedecker, M.J., and Bekins, B.A., 1999,

Coupled biogeochemical modeling of ground water contamination at the Bemidji, Minnesota, crude oil spill site, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 153-158.

Curtis, G.P., and Davis, J.A., 2004,

Simulation of U(VI) transport in groundwater with variable geochemical conditions, in Wanty, R.B., and Seal II, R.R., eds., Proceedings of the Eleventh International Symposium on Water-Rock Interaction, Saratoga Springs, New York, July 2004: Balkema, v. 2, p. 927-933.

Day-Lewis, F.D., Hsieh, P.A., Shapiro, A.M., and Gorelick, S.M., 1999,

Geostatistical simulation of high-transmissivity zones at the Mirror Lake Site in New Hampshire--Conditioning to hydraulic information, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 685-693.

Dillard, L.A., Essaid, H.I., and Herkelrath, W.N., 1996,

Multiphase-flow modeling of the Bemidji, Minnesota crude-oil-spill site with geostatistical simulation of hydraulic properties, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 679-688.

Diodato, D.M., 1999,

Simulation of mass transport using the FracTran98 Module of FracSys2000, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 833-840.

Druliner, A.D., and McGrath, T.S., 1996,

Predicting nitrate-nitrogen and atrazine contamination in the High Plains aquifer in Nebraska, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 515-524.

English, C.A., Gartner, J.W., Smith, R.E., and Cheng, R.T., 1999,

A marine nowcast system for San Francisco Bay, California, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 2 of 3--Contamination of Hydrologic Systems and Related Ecosystems: U.S. Geological Survey Water-Resources Investigations Report 99-4018B, p. 65-68.

Essaid, H.I., Baedecker, M.J., and Cozzarelli, I.M., 1996,

Use of simulation to study field-scale solute transport and biodegradation at the Bemidji, Minnesota, crude-oil spill site, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 621-629.

Eychaner, J.H., 1988,

Evolution of acidic ground-water contamination in a copper-mining area in Arizona, in Ouazar, D., Brebbia, C.A., and Stout, G.E., eds., Water Quality, Planning and Management, v. 6, of Computer Methods and Water Resources--Proceedings of the First International Conference, Morocco, 1988: Southampton, United Kingdom, Computational Mechanics Publications, p. 291-302.

Franks, B.J., 1988,

Preliminary three-dimensional simulation of ground-water flow, in Ragone, S.E., ed., U.S. Geological Survey Program on Toxic Waste--Ground-Water Contamination--Proceedings of the second technical meeting, Cape Cod, Massachusetts, October 21-25, 1985: U.S. Geological Survey Open-File Report 86-481, p. A-3-A-5.

Garabedian, S.P., and LeBlanc, D.R., 1991,

Transport of reactive and nonreactive solutes--Results of a natural-gradient tracer test in a sand and gravel aquifer, Cape Cod, Massachusetts, in Moltyaner, G., ed., Transport and mass exchange processes in sand and gravel aquifers--Field and modeling studies, Proceedings of the International Conference and Workshop, Ottawa, Ontario, October 1-4, 1990: Chalk River, Ontario, Atomic Energy of Canada, Ltd., v. AECL-10308, p. 11-33.

Garabedian, S.P., and LeBlanc, D.R., 1987,

A natural-gradient tracer experiment to verify stochastic models of solute transport, Cape Cod, Massachusetts, in Proceedings of International Congress on Hazardous Materials Management, International Congress of Environmental Professionals, Chattanooga, Tennessee, June 8-12, 1987: Northbrook, Ill., Pudvan Publishing, p. 187-197.

Gelhar, L.W., 1996,

Perspectives on field scale application of stochastic subsurface hydrology, in Subsurface Flow and Transport: The Stochastic Approach, Second IHP/IAHS George Kovacs Colloquium, Proceedings, Paris, France, January 26-28, 1995: Cambridge University Press/UNESCO.

Glynn, P.D., 1990,

Modeling solid-solution reactions in low-temperature aqueous systems, in Melchior, D.C., and Bassett, R.L., eds., Chemical modeling of aqueous systems II: Washington, D.C., American Chemical Society ACS Symposium Series 416, p. 74-86.

Glynn, P.D., Engesgaard, P., and Kipp, K.L., 1991,

Use and limitations of two computer codes for simulating geochemical mass transport at the Pinal Creek toxic-waste site, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 454-460.

Glynn, P.D., and Parkhurst, D.L., 1992,

Modeling non-ideal solid-solution aqueous-solution reactions in mass transfer computer codes, in Kharaka, Y.K., and Maest, A.S., eds., Low temperature environments, v. 1 of Water-rock interaction--Proceedings of the 7th International Symposium on Water-Rock Interaction--WRI-7, Park City, Utah, July 9-23, 1992: Rotterdam, Balkema, p. 175-179.

Godsy, E.M., Goerlitz, D.F., and Grbic'-Galic', D., 1990,

Anaerobic biodegradation of creosote contaminants in natural and simulated ground water ecosystems, in Symposium on Bioremediation of Hazardous Wastes--EPA's Biosystems Technology Development Program, Falls Church, Virginia, 1990: p. 39-42.

Godsy, E.M., Goerlitz, D.F., and Grbic'-Galic', D., 1987,

Anaerobic biodegradation of creosote contaminants in natural and simulated ground-water ecosystems, in Franks, B.J., ed., U.S. Geological Survey Program on Toxic Waste--Ground-Water Contamination--Proceedings of the third technical meeting, Pensacola, Florida, March 23-27, 1987: U.S. Geological Survey Open-File Report 87-109, p. A-17-A-19.

Goode, D.J., 1999,

Modifications to the solute-transport model MOC3D for simple reactions, double porosity, and age, with application at Mirror Lake, New Hampshire, and other sites, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 821-832.

Goode, D.J., Hsieh, P.A., Shapiro, A.M., Wood, W.W., and Kraemer, T.F., 1993,

Concentration history during pumping from a leaky aquifer with stratified initial concentration, in Shen, H.W., Su, S.T., and Wen, F., eds., Proceedings of the 1993 National Conference on Hydraulic Engineering, San Francisco, Calif., July 25-30, 1993: American Society of Civil Engineers, p. 29-35.

Grégoire, C., Lane, J.W.J., and Joesten, P.K., 2005,

Steam injection pilot study in a contaminated fractured limestone (Maine, USA)--Modeling and analysis of borehole radar reflection data, in Proceedings of the 3rd International Workshop on Advanced Ground Penetrating Radar, Delft, The Netherlands, May 2-4, 2005.

Grove, D.B., 1987,

Modeling sorptive processes in laboratory columns, in Ragone, S.E., and Sulam, D., eds., Program overview and selected papers from the Toxic-Waste Program technical meeting--Tucson, Arizona, March 20-22, 1984: U.S. Geological Survey Open-File Report 86-324, p. 79-81.

Harvey, R.W., 1989,

Considerations for modeling transport of bacteria in contaminated aquifers, in Abriola, L.M., ed., Groundwater Contamination, Proceedings of Symposium, Third Scientific Assembly, International Association of Hydrological Sciences, Baltimore, Maryland, May 10-19, 1989: Wallingsford, England, International Association of Hydrological Sciences Press, International Association of Hydrological Sciences Publication 185, p. 75-82.

Herkelrath, W.N., Essaid, H.I., and Hess, K.M., 1991,

Field and modeling studies of immiscible fluid flow above a contaminted water-table aquifer, in Proceedings of the International Hydrology and Water Resources Symposium 1991, Challenges for Sustainable Development, Perth, Australia, October 2-4, 1991: p. 424-428.

Hess, K.M., Davis, J.A., Coston, J.A., and Kent, D.B., 1999,

Multispecies reactive transport in an aquifer with spatially variable chemical conditions--Dispersion of bromide and nickel tracers, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 393-404.

Hicks, D.W., Asmussen, L.E., and Smith, C.N., 1990,

Study design to investigate and simulate agricultural fate in a ground-water recharge system (Plains, Georgia), in Proceedings of the American Society for Agronomy, San Antonio, Texas.

Hornecker, M.M., and Kolar, R.L., 1998,

Automated soil moisture observations and infiltration modeling at the closed Norman, Oklahoma landfill, in Morel-Seytoux, H.J., ed., 18th AGU Hydrology Days, Proceedings, Fort Collins, Colo., March 30-April 2, 1998: p. 141-152.

Hsieh, P.A., Shapiro, A.M., and Tiedeman, C.R., 1999,

Computer simulation of fluid flow in fractured rocks at the Mirror Lake FSE well field, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 777-781.

Hult, M.F., Landon, M.K., and Pfannkuch, H.O., 1991,

Field validation of conceptual models of mobilization and transport of volatile petroleum derivatives in the unsaturated zone near Bemidji, Minnesota, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 621-626.

Kent, D.B., Abrams, R.H., Davis, J.A., and Coston, J.A., 1999,

Modeling the influence of adsorption on the fate and transport of metals in shallow ground water--Zinc contamination in the sewage plume on Cape Cod, Massachusetts, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 361-369.

Kipp, K.L., 1987,

Preliminary one-dimensional simulation of ammonium and nitrate in the Cape Cod sewage plume, in Franks, B.J., ed., U.S. Geological Survey Program on Toxic Waste--Ground-Water Contamination--Proceedings of the third technical meeting, Pensacola, Florida, March 23-27, 1987: U.S. Geological Survey Open-File Report 87-109, p. B-43-B-46.

Konikow, L.F., 2006,

From data gathering to ground-water modeling, in Sánchez-Vila, X., Cabrera, M.C., and Valverde, M., eds., Proceedings of the IAH Workshop From Data Gathering and Groundwater Modelling to Integrated Management, Alicante, Spain, October 4-8, 2005: Madrid, Instituto Geológico y Minero de España, p. 17-31.

Konikow, L.F., Campbell, P.J., and Sanford, W.E., 1996,

Modeling brine transport in a porous medium--A reevaluation of the HYDROCOIN level 1, case 5 problem, in Kovan, K., and Van den Heijde, P., eds., Calibration and Reliability in Groundwater Modeling [proceedings]: IAHS Publication No. 237, p. 363-372.

Konikow, L.F., Harte, P.T., and Hornberger, G.Z., 2001,

Simulating solute transport across horizontal-flow barriers, in Seo, Poeter, and Zheng, eds., Proceedings MODFLOW 2001 and other modeling odysseys conference, Ground Water Modeling Center, Colorado School of Mines, Golden, Colorado, September 2001: p. 510-516.

Konikow, L.F., and Swain, L.A., 1990,

Assessment of predictive accuracy of a model of artificial recharge effects in the Upper Coachella Valley, Calif., in Simpson, E.S., and Sharp, J.M., Jr., eds., Selected papers on hydrogeology, 1989 IGC Meeting, Proceedings, Washington, D.C., 1989: International Association of Hydrogeologists, v. 1, p. 433-449.

Krumme, M.L., Smith, R.L., and Dwyer, D.F., 1991,

Survival of a model pollutant-degrading microorganism in a sand and gravel aquifer and in microcosms, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 144-147.

Lahvis, M.A., and Rehmann, L.C., 1999,

Simulation of methyl tert-butyl ether (MTBE) transport to ground water from immobile sources of gasoline in the vadose zone, in Stanley, A., ed., Proceedings of the 2000 Petroleum Hydrocarbons and Organic Chemicals in Ground Water--Prevention, Detection, and Remediation, Houston, Texas, November 17-19, 1999: Westerville, Ohio, National Ground Water Association, p. 247-259.

LeBlanc, D.R., 1984,

Digital modeling of solute transport in a plume of sewage-contaminated ground water, in LeBlanc, D.R., ed., Movement and fate of solutes in a plume of sewage-contaminated ground water, Cape Cod, Massachusetts--U.S. Geological Survey Toxic Waste Ground-Water Contamination Program--Papers presented at the toxic waste technical meeting, Tucson, Arizona, March 20-22, 1984: U.S. Geological Survey Open-File Report 84-475, p. 11-46.

LeBlanc, D.R., and Celia, M.A., 1996,

Numerical simulation of downward movement of solutes during a natural-gradient tracer test in sand and gravel, Cape Cod, Massachusetts, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 283-287.

Leonard, R.A., and Knisel, W.G., 1989,

Application of a model to evaluate agrichemical loading to ground water at the Plains, Georgia, research site, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 639.

Leonard, R.A., Knisel, W.G., Davis, F.M., and Truman, C.C., 1991,

Application of the gleams model at the Plains, Georgia, agricultural-management site, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 601-604.

MacWilliams, M.L., and Cheng, R.T., 2007,

Three-dimensional hydrodynamic modeling of San Pablo Bay on an unstructured grid, in Proceedings of the 7th International Conference on HydroScience and Engineering, Philadelphia, September 10-13, 2006: p. 16, ISBN:0977447405.

Martin, M., 1996,

Simulation of transport, desorption, volatilization, and microbial degradation of trichloroethylene in ground water at Picatinny Arsenal, New Jersey, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 307-313.

Martin, M., 1991,

Simulation of reactive multispecies transport in two-dimensional ground-water-flow systems, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 698-703.

Martin, M., 1989,

Preliminary results of a study to simulate trichloroethylene movement in ground water at Picatinny Arsenal, New Jersey, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 377-383.

Masterson, J.P., and Walter, D.A., 1996,

Effects of changes in aquifer properties on simulated fluid-particle pathlines, Cape Cod, Massachusetts, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 289-296.

McMahon, P., Böhlke, J.K., Brown, C., Burow, K., Crandall, C., and Landon, M., 2005,

Use of isotopes, age-dating, and numerical simulation to evaluate source histories and transport of NO3- to public supply wells in principal aquifers of the United States, in Proceedings of the Sixth International Symposium on Applied Isotope Geochemistry, Prague, Czech Republic, September 11-16, 2005: p. 157-158 (CD-ROM).

Miller, R.T., 1988,

Hydrogeology and preliminary regional flow modeling at the Bemidji, Minnesota, research site, in Ragone, S.E., ed., U.S. Geological Survey Program on Toxic Waste--Ground-Water Contamination--Proceedings of the second technical meeting, Cape Cod, Massachusetts, October 21-25, 1985: U.S. Geological Survey Open-File Report 86-481, p. C-11-C-16.

Moench, A.F., and Kharaka, Y.K., 2001,

Analytical model for deep well injection of cold brine into a hot aquifer, in Cidu, R., ed., Proceedings of the Tenth International Symposium WRI-10, Villasimius, Italy, June 10-15, 2001: A.A. Balkema, v. 1, p. 193-196.

Navoy, A.S., 1996,

Use of flowpath simulation to determine contributing areas and traveltimes of nonpoint-source ground-water contamination, Gloucester County, New Jersey, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 1011-1019.

Neaville, C.C., 1989,

Simulation of ground- and surface-water flow in the Globe area, Arizona, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 577-579.

Nimmo, J.R., 1998,

Modeling structural effects on soil hydraulic properties, in Proceedings of the 16th World Congress of Soil Science, Montpellier, France, August 20-26, 1998.

Nordstrom, D.K., 2005,

A river on the edge--Water quality in the Red River and the USGS background study, in Price, L.G., Bland, D., McLemore, V.T., and Barker, J.M., eds., Mining in New Mexico, Decision-Makers Conference 2005, Taos region, Socorro, New Mexico: New Mexico Bureau of Geology and Mineral Resources, p. 64-67.

Nordstrom, D.K., 1995,

Geochemical modeling of natural aquatic systems--Applications and limitations, in Stevens, P.R., and Nicholson, T.J., eds., Joint U.S. Geological Survey, U.S. Nucelar Regulatory Commission Workshop on Research Related to Low-Level Radioactive Waste Disposal, May 4-6, 1993, National Center, Reston, Virginia: U.S. Geological Survey Water-Resources Investigations Report 95-4015, p. 126-131.

Nordstrom, D.K., 1994,

On the evaluation and application of geochemical models, appendix II, in Proceedings of the 5th CEC Natural Analogue Working Group and Alligator Rivers Analogue Project, Toledo, Spain, October 5-19, 1994: p. 375-385.

Nordstrom, D.K., 1991,

Chemical modeling of acid mine waters in the Western United States, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 534-538.

Papoulias, D.M., Noltie, D.B., and Tillitt, D.E., 1999,

A model fish system to test chemical effects on sexual differentiation and development, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 2 of 3--Contamination of Hydrologic Systems and Related Ecosystems: U.S. Geological Survey Water-Resources Investigations Report 99-4018B, p. 447-453.

Parkhurst, D.L., Thorstenson, D.C., and Kipp, K.L., 2000,

Calculating carbon-isotope compositions in an unsaturated zone with seasonally varying CO2 production, in Wang, Y., ed., Proceedings of the International Symposium on Hydrogeology and the Environment, Wuhan, Peoples Republic of China, October 17-21, 2000: p. 220-224.

Peng, W.S., Hampton, D.R., Benegar, J.J., Kambham, K.K.R., and Konikow, L.F., 1998,

Can MODFLOW-based contaminant transport models predict breakthrough?, in Proceedings of the MODFLOW-98 Conference, Golden, Colorado, October 1998: p. 363-370.

Peterson, D.H., Smith, R.E., Dettinger, M.D., Cayan, D.R., Hager, S.W., and Schemel, L.E., 1999,

Forecasting spring discharge in the west--A step towards forecasting stream chemistry, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 2 of 3--Contamination of Hydrologic Systems and Related Ecosystems: U.S. Geological Survey Water-Resources Investigations Report 99-4018B, p. 51-58.

Pfannkuch, H.O., 1987,

Bulk and distributed parameter mass-transfer models for determination of the source strength at an oil spill/ground-water interface, in Franks, B.J., ed., U.S. Geological Survey Program on Toxic Waste--Ground-Water Contamination--Proceedings of the third technical meeting, Pensacola, Florida, March 23-27, 1987: U.S. Geological Survey Open-File Report 87-109, p. C-11-C-12.

Plummer, L.N., 1992,

Geochemical modeling--Past, present, future, in Kharaka, Y., and Maest, A.S., eds., Low temperature environments, v. 1 of Water-rock interaction--Proceedings of the 7th International Symposium on Water-Rock Interaction--WRI-7, Park City, Utah, July 9-23, 1992: Rotterdam, Balkema, p. 23-33.

Pollock, D.W., 1984,

Use of computer for simulation for evaluating the movement of petroleum in the shallow subsurface, in Hult, M.F., ed., Ground-water contamination by crude oil at the Bemidji, Minnesota, research site--U.S. Geological Survey Toxic Waste--Ground-Water Contamination Study--Papers presented at the toxic-waste technical meeting, Tucson, Arizona, March 20-22, 1984: U.S. Geological Survey Water-Resources Investigations Report 84-4188, chap. B, p. 17-21.

Pollock, D.W., and Zehner, H.H., 1981,

A conceptual analysis of the ground water flow system at the Maxey Flats radioactive waste burial site, Fleming County, Kentucky, in Little, C.A., and Stratton, L.E., eds., Modeling and low-level waste management--An interagency workshop: Oak Ridge National Laboratory (ORO-821), p. 197-213.

Russell, T.F., and Healy, R.W., 2000,

Analytical tracking along streamlines in temporally linear Raviart-Thomas velocity fields, in Proceedings of the XIII International Conference on Computational Methods in Water Resources, Calgary, Alberta, June 25-29, 2000: p. 631-638.

Sanford, W.E., Plummer, L.N., McAda, D.P., Bexfield, L.M., and Anderholm, S.K., 2000,

Estimation of hydrologic parameters for the ground-water model of the Middle Rio Grande Basin using carbon-14 and water-level data, in Cole, J.C., ed., U.S. Geological Survey Middle Rio Grande Basin Study--Proceedings of the Fourth Annual Workshop, Albuquerque, New Mexico, February 15-16, 2000: U.S. Geological Survey Open-File Report 00-488.

Shapiro, A.M., Wood, W.W., Busenberg, E., Drenkard, S., Plummer, L.N., Torgersen, T., and Schlosser, P., 1996,

A conceptual model for estimating regional ground-water velocity in bedrock of the Mirror Lake area, Grafton County, New Hampshire, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 171-177.

Smith, C.N., Brown, D.S., Parrish, D.S., Asmussen, L.E., and Hicks, D.W., 1990,

Cooperative approach for field validating agricultural chemical transport models, in Proceedings of the American Society of Agronomy, San Antonio, Tex.

Smith, K.S., Ranville, J.F., and Macalady, D.L., 1991,

Predictive modeling of copper, cadmium, and zinc partitioning between streamwater and bed sediment from a stream receiving acid mine drainage, St. Kevin Gulch, Colorado, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 380-386.

Smith, P.E., 1994,

San Francisco Bay test case for 3-D model verification, in 1994 National Conference on Hydraulic Engineering, Proceedings, Buffalo, N.Y., August 1-5, 1994: American Society of Civil Engineers, v. 2, p. 885-889.

Squillace, P.J., and Pollock, D.W., 1996,

Comparison of simulated and observed movement of bank-storage water adjacent to the Cedar River, Iowa, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 525-534.

Stackelberg, P.E., and Eckhardt, D.A.V., 1996,

Modeling statistical relations among shallow ground-water quality, human activities, land use, and thickness of the unsaturated zone on Long Island, New York, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 993-1000.

Stollenwerk, K.G., 1991,

Simulation of copper, cobalt, and nickel sorption in an alluvial aquifer near Globe, Arizona, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 502-506.

Stollenwerk, K.G., 1991,

Simulation of molybdate sorption with the diffuse layer surface-complexation model, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 47-52.

Stollenwerk, K.G., and Kipp, K.L., 1990,

Simulation of molybdate transport with different rate-controlled mechanisms, in Melchior, D.C., and Bassett, R.L., eds., Chemical modeling of aqueous systems II: Washington, D.C., American Chemical Society ACS Symposium Series 416, p. 243-257.

Stollenwerk, K.G., and Kipp, K.L., 1989,

Simulation of the rate-controlled transport of molybdate in column experiments, in Mallard, G.E., and Ragone, S.E., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Phoenix, Arizona, September 26-30, 1988: U.S. Geological Survey Water-Resources Investigations Report 88-4220, p. 151-161.

Stollenwerk, K.G., and Parkhurst, D.L., 1999,

Modeling the evolution and natural remediation of a ground-water sewage plume, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 3 of 3--Subsurface Contamination from Point Sources: U.S. Geological Survey Water-Resources Investigations Report 99-4018C, p. 371-381.

Thurman, E.M., 1987,

A conceptual chemical process model for sewage contamination of a sand and gravel aquifer, in Franks, B.J., ed., U.S. Geological Survey Program on Toxic Waste--Ground-Water Contamination--Proceedings of the third technical meeting, Pensacola, Florida, March 23-27, 1987: U.S. Geological Survey Open-File Report 87-109, p. B-37-B-42.

Voronin, L.M., 1991,

Simulation of ground-water flow at Picatinny Arsenal, New Jersey, in Mallard, G.E., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Monterey, California, March 11-15, 1991: U.S. Geological Survey Water-Resources Investigations Report 91-4034, p. 713-720.

Voss, C.I., and Knopman, D.S., 1990,

Strong classical one-dimensional descriptions of field solute transport exist! Modeling the Cape Cod tracer test, in Solving Ground Water Problems with Models, Indianapolis, Indiana, February 7-9, 1989: Dublin, Ohio, National Water Well Association, p. 209-232.

Voss, C.I., and Wood, W.W., 1994,

Synthesis of geochemical, isotopic and groundwater modelling analysis to explain regional flow in a coastal aquifer of southern Oahu, Hawaii, in Proceedings of a final research coordination meeting: International Atomic Energy Agency Report IEAE-TECDOC-777, p. 147-178.

Waber, N., and Nordstrom, D.K., 1992,

Geochemical modeling of granitic ground waters at the Stripa site (Sweden) using a mass balance approach, in Kharaka, Y.K., and Maest, A.S., eds., Proceedings of the 7th International Symposium on Water-Rock Interaction, Park City, Utah, July 13-18, 1992: A.A. Balkema, p. 243-246.

Wagner, B.J., and Harvey, J.W., 1996,

Solute-transport parameter estimation for an injection experiment at Pinal Creek, Arizona, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 1081-1087.

Walton-Day, K., Kimball, B.A., and Runkel, R.L., 2002,

The use of mass-loading studies and solute transport modeling to assist in the development of TMDL's for streams affected by mine drainage, in Workshop Notebook, Colorado Department of Health and Environment, 10th National Nonpoint Source Monitoring Workshop, Breckenridge, Colorado, September 8-12, 2002, 5 p.

Walton-Day, K., Runkel, R.L., Kimball, B.A., and Bencala, K.E., 2000,

Application of the solute-transport models OTIS and OTEQ and implications for remediation in a watershed affected by acid mine drainage, Cement Creek, Animas River basin, Colorado, in Proceedings from the Fifth International Conference on Acid Rock Drainage, Denver, Colorado, May 21-24, 2000: Littleton, Colo., Society for Mining, Metallurgy, and Exploration, p. 389-399.

Walton-Day, K., Runkel, R.L., Kimball, B.A., and Bencala, K.E., 1999,

Application of the solute-transport models OTIS and OTEQ and implications for remediation in a watershed affected by acid mine drainage, Cement Creek, Animas River Basin, Colorado, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 1 of 3--Contamination from Hardrock Mining: U.S. Geological Survey Water-Resources Investigations Report 99-4018A, p. 37-46.

Walvoord, M.A., and Stonestrom, D.A., 2004,

Enhanced gas-phase transport in a deep unsaturated zone, Amargosa Desert (U.S.A.), in Kovar, K., Hrkal, Z., and Bruthans, J., eds., Proceedings of International Conference on Finite-element Models, MODFLOW, and More, Karlovy Vary, Czech Republic, September 12-16, 2004: IAHS, p. 227-230.

Warren, E., and Godsy, E.M., 1996,

Modeling breakthrough of nitrogen heterocyclic compounds in laboratory columns containing creosote-contaminated aquifer material, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 2, p. 851-858.

Welty, C., Joss, C.J., and Baehr, A.L., 1996,

Optimizing the design of vapor-extraction remediation systems for removal of organic contaminants from the unsaturated zone, in Morganwalp, D.W., and Aronson, D.A., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the technical meeting, Colorado Springs, Colorado, September 20-24, 1993: U.S. Geological Survey Water-Resources Investigations Report 94-4015, v. 1, p. 55-59.

Woodward, D.F., Farag, A.M., DeLonay, A.J., Cleveland, L.J., Brumbaugh, W.G., and Little, E.E., 1999,

The potential for contaminated ground water to adversely affect chinook salmon under exposure conditions simulating the Hanford Reach of the Columbia River, Washington, USA, in Morganwalp, D.W., and Buxton, H.T., eds., U.S. Geological Survey Toxic Substances Hydrology Program--Proceedings of the Technical Meeting, Charleston, South Carolina, March 8-12, 1999--Volume 2 of 3--Contamination of Hydrologic Systems and Related Ecosystems: U.S. Geological Survey Water-Resources Investigations Report 99-4018B, p. 455-463.

Wright, D.L., Smith, D.V., Abraham, J.D., Hutton, R.S., Bond, E.K., Chi, T.J., Alaeddin, A.A., and Chew, W.C., 2000,

Imaging and modeling new VETEM data, in Noon, D.A., Stickley, G.F., and Longstaff, D., eds., Proceedings of the Eighth International Conference on Ground Penetrating Radar, Gold Coast, Queensland, Australia, May 23-26, 2000: University of Queensland, Cooperative Research Centre for Sensor Signal and Information Processing (CSSIP), p. 146-150.

Wright, D.L., Smith, D.V., Abraham, J.D., Smith, R.T., Cui, T.J., and Chew, W.C., 1999,

New field and modeling results from a simulated waste pit using the enhanced very early time electromagnetic (VETEM) prototype system, in Powers, M.H., Cramer, L., and Bell, R.S., eds., Proceedings of the Symposium on the Application of Geophysics to Engineering and Environmental Problems (SAGEEP '99), Oakland, California, March 14-18, 1999: p. 811-820.

Zhu, L., Liu, L., Lane, J.W., Jr., and Day-Lewis, F.D., 2006,

Numerical simulation of EM wave propagation using split-step alternating direction implicit FDTD method, in Proceedings of the Eleventh International Conference on Ground Penetrating Radar (CD-ROM), Columbus, Ohio, June 19-22, 2006.

Charlton, S.R., and Parkhurst, D.L., 2002,

PHREEQCI--A graphical user interface to the geochemical model PHREEQC: U.S. Geological Survey Fact Sheet 031-02, 2 p.

Goode, D.J., 1999,

Simulating contaminant attenuation, double-porosity exchange, and water age in aquifers using MOC3D: U.S. Geological Survey Fact Sheet 086-99, 4 p.

Goolsby, D.A., and Battaglin, W.A., 2000,

Nitrogen in the Mississippi Basin--Estimating sources and predicting flux to the Gulf of Mexico: U.S. Geological Survey Fact Sheet 135-00, 6 p.

Presser, T.S., and Luoma, S.N., 2004,

Linking selenium sources to ecosystems--San Francisco Bay-Delta model: U.S. Geological Survey Fact Sheet 2004-3091, 4 p.

Abbott, M.L., Susong, D.D., Krabbenhoft, D.P., and Rood, A.S., 2002,

Mercury deposition in snow near an industrial emission source in the western U.S. and comparison to ISC3 model predictions: Water, Air, and Soil Pollution, v. 139, no. 1-4, p. 95-114, doi:10.1023/A:1015856717964.

Abrams, R.H., and Loague, K., 2000,

A compartmentalized solute transport model for redox zones in contaminated aquifers--1, Theory and development: Water Resources Research, v. 36, no. 8, p. 2001-2013, 2000WR900110, doi:10.1029/2000WR900110.

Abrams, R.H., and Loague, K., 2000,

A compartmentalized solute transport model for redox zones in contaminated aquifers--2, Field-scale simulations: Water Resources Research, v. 36, no. 8, p. 2015--2029, 10.1029/2000WR900111, doi:10.1029/2000WR900111.

Amos, R.T., and Mayer, K.U., 2006,

Investigating the role of gas bubble formation and entrapment in contaminated aquifers--Reactive transport modeling: Journal of Contaminant Hydrology, v. 87, p. 123-154, doi:10.1016/j.jconhyd.2006.04.008.

Amos, R.T., and Mayer, K.U., 2006,

Investigating ebullition in a sand column using dissolved gas analysis and reactive transport modeling: Environmental Science and Technology, v. 40, p. 5361-5367, doi:10.1021/es0602501.

Anderson, D.E., Miller, D.R., Wang, Y.S., Yendol, W.G., and Mierzejewski, K., 1992,

Deposition of aerially applied BT in an oak forest and its prediction with the FSCBG model: Journal of Applied Meteorology, v. 31, p. 1457-1466.

Baedecker, M.J., Cozzarelli, I.M., Siegel, D.I., Bennett, P.C., and Eganhouse, R.P., 1993,

Crude oil in a shallow sand and gravel aquifer--III, Biogeochemical reactions and mass balance modeling in anoxic ground water: Applied Geochemistry, v. 8, no. 6, p. 569-586, doi:10.1016/0883-2927(93)90012-6.

Baehr, A.L., and Baker, R.J., 1995,

Use of a reactive gas transport model to determine rates of hydrocarbon biodegradation in unsaturated porous media: Water Resources Research, v. 31, no. 11, p. 2877-2882, 95WR02077, doi:10.1029/95WR02077.

Battaglin, W.A., and Goolsby, D.A., 1998,

Regression models of herbicide concentrations in outflow from reservoirs in the midwestern USA, 1992-1993: Journal of the American Water Resources Association, v. 34, no. 6, p. 1369-1390, doi:10.1111/j.1752-1688.1998.tb05438.x.

Battaglin, W.A., and Goolsby, D.A., 1997,

Statistical modeling of agricultural chemical occurrence in midwestern rivers: Journal of Hydrology, v. 196, no. 1-4, p. 1-25, doi:10.1016/S0022-1694(97)00011-5.

Bekins, B.A., E.M., G., and Goerlitz, D.F., 1993,

Modeling steady-state methanogenic degradation of phenols in groundwater: Journal of Contaminant Hydrology, v. 14, no. 3-4, p. 279-294, doi:10.1016/0169-7722(93)90029-R

Bekins, B.A., Warren, E., and Godsy, E.M., 1998,

A comparison of zero-order, first-order, and Monod biotransformation models: Ground Water, v. 36, no. 2, p. 261-268.

Böhlke, J.K., Smith, R.L., and Miller, D.N., 2006,

Ammonium transport and reaction in contaminated groundwater--Application of isotope tracers and isotope fractionation studies: Water Resources Research, v. 42, W05411, doi:10.1029/2005WR004349.

Bratkovich, A., Dinnel, S.P., and Goolsby, D.A., 1995,

Variability and prediction of freshwater and nitrate fluxes for the Louisiana-Texas shelf--Mississippi and Atchafalaya source functions: Estuaries, v. 17, no. 4, p. 766-778.

Bredehoeft, J.D., and Konikow, L.F., 1993,

Reply to comment by G. de Marsily, P. Combes, and P. Goblet on "Ground-water models cannot be validated": Advances in Water Resources, v. 15, no. 6, p. 371-372.

Bredehoeft, J.D., and Konikow, L.F., 1993,

Ground-water models--Validate or invalidate: Ground Water, v. 31, no. 2, p. 178-179.

Broshears, R.E., Runkel, R.L., Kimball, B.A., Bencala, K.E., and McKnight, D.M., 1996,

Reactive solute transport in an acidic stream--Experimental pH increase and simulation of controls on pH, aluminum, and iron: Environmental Science and Technology, v. 30, no. 10, p. 3016-24, doi:10.1021/es960055u.

Brown, J.G., and Glynn, P.D., 2003,

Kinetic dissolution of carbonates and Mn oxides in acidic water--measurement of in situ field rates and reactive transport modeling: Applied Geochemistry, v. 18, no. 8, p. 1225-1239, doi:10.1016/S0883-2927(03)00010-6.

Brusseau, M.L., and Srivastava, R., 1999,

Nonideal transport of reactive solutes in heterogeneous porous media--4, Analysis of the Cape Cod natural-gradient field experiment: Water Resources Research, v. 35, no. 4, p. 1113-1125, 1998WR900019, doi:10.1029/1998WR900019.

Buchwalter, D.B., Cain, D.J., Clements, W.H., and Luoma, S.N., 2008,

Using biodynamic models to reconcile differences between laboratory toxicity tests and field biomonitoring with aquatic insects: Environmental Science and Technology, doi:10.1021/es703130e (Advanced Web release).

Buchwalter, D.B., Cain, D.J., Clements, W.H., and Luoma, S.N., 2007,

Using biodynamic models to reconcile differences between laboratory toxicity tests and field biomonitoring with aquatic insects: Environmental Science and Technology, v. 41, no. 13, p. 4,821-4,828, doi:10.1021/es070464y.

Chapra, S.C., and Runkel, R.L., 1999,

Modeling impact of storage zones on stream dissolved oxygen: Journal of Environmental Engineering, v. 125, no. 5, p. 415-419.

Cheng, R.T., Casulli, V., and Gartner, J.W., 1993,

Tidal, residual, intertidal mudflat (TRIM) model and its applications to San Francisco Bay, California: Estuarine, Coastal and Shelf Science, v. 36, p. 235-280, doi:10.1006/ecss.1993.1016.

Cho, H.J., Jaffé, P.R., and Smith, J.A., 1993,

Simulating the volatilization of solvents in unsaturated soils during laboratory and field infiltration experiments: Water Resources Research, v. 29, no. 10, p. 3329-3342, 93WR01414, doi:10.1029/93WR01414.

Cloern, J.E., 2007,

Habitat connectivity and ecosystem productivity--Implications from a simple model: The American Naturalist, v. 169, no. 1, p. E21-E33, doi:10.1086/510258.

Cloern, J.E., 2001,

Our evolving conceptual model of the coastal eutrophication problem: Marine Ecology Progress Series, v. 210, p. 223-253, doi:10.3354/meps210223.

Cloern, J.E., Grenz, C., and Vidergar-Lucas, L., 1995,

An empirical model of the phytoplankton chlorophyll/carbon ratio--The conversion factor between productivity and growth rate: Limnology and Oceanography, v. 40, no. 7, p. 1313-1321.

Curtis, G.P., 2003,

Comparison of approaches for simulating reactive solute transport involving organic degradation reactions by multiple terminal electron acceptors: Computers and Geosciences, v. 29, no. 3, p. 319-329, doi:10.1016/S0098-3004(03)00008-6.

Curtis, G.P., Davis, J.A., and Naftz, D.L., 2006,

Simulation of reactive transport of uranium(VI) in groundwater with variable chemical conditions: Water Resources Research, v. 42, W04404, doi:10.1029/2005WR003979.

Davis, J.A., Meece, D.E., Kohler, M., and Curtis, G.P., 2004,

Approaches to surface complexation modeling of uranium(VI) adsorption on aquifer sediments: Geochimica et Cosmochimica Acta, v. 68, p. 3621-3641, doi:10.1016/j.gca.2004.03.003.

Davis, J.A., Yabusaki, S.B., Steefel, C.I., Zachara, J.M., Curtis, G.P., Redden, G.P., Criscenti, L.J., and Honeyman, B.D., 2004,

Assessing conceptual models for subsurface reactive transport of inorganic contaminants: Eos, v. 85, no. 44, p. 449-455.

Day-Lewis, F.D., Hsieh, P.A., and Gorelick, S.M., 2000,

Identifying fracture-zone geometry using simulated annealing and hydraulic-connection data: Water Resources Research, v. 36, no. 7, p. 1707-1721, 2000WR900073, doi:10.1029/2000WR900073.

Day-Lewis, F.D., Singha, K., and Binley, A., 2005,

Applying petrophysical models to radar travel time and electrical resistivity tomograms--Resolution-dependent limitations: Journal of Geophysical Research, v. 110, no. B08206, p. 17, B08206, doi:10.1029/2004JB003569.

Dettinger, M.D., Cayan, D.R., Meyer, M.K., and Jeton, A.E., 2004,

Simulated hydrologic responses to climate variations and change in the Merced, Carson, and American River basins, Sierra Nevada, California, 1900-2099: Climate Change, v. 62, p. 283-317, 5147542, doi:10.1023/B:CLIM.0000013683.13346.4f.

Dillard, L.A., Essaid, H.I., and Blunt, M.J., 2001,

A functional relation for field-scale nonaqueous phase liquid dissolution developed using a pore network model: Journal of Contaminant Hydrology, v. 48, no. 1-2, p. 89-119, doi:10.1016/S0169-7722(00)00171-6.

Dillard, L.A., Essaid, H.I., and Herkelrath, W.N., 1997,

Multiphase flow modeling of a crude-oil spill site with a bimodal permeability distribution: Water Resources Research, v. 33, no. 7, p. 1617-1632, 97WR00857, doi:10.1029/97WR00857.

Engesgaard, P., and Kipp, K.L., 1992,

A geochemical transport model for redox-controlled movement of mineral fronts in groundwater flow systems--A case of nitrate removal by oxidation of pyrite: Water Resources Research, v. 28, no. 10, p. 2829-2843, 92WR01264, doi:10.1029/92WR01264.

Essaid, H.I., Bekins, B.A., Godsy, E.M., Warren, E., Baedecker, M.J., and Cozzarelli, I.M., 1995,

Simulation of aerobic and anaerobic biodegradation processes at a crude oil spill site: Water Resources Research, v. 31, no. 12, p. 3309-3327, 95WR02567, doi:10.1029/95WR02567.

Essaid, H.I., Cozzarelli, I.M., Eganhouse, R.P., Herkelrath, W.N., Bekins, B.A., and Delin, G.N., 2003,

Inverse modeling of BTEX dissolution and biodegradation at the Bemidji, MN crude-oil spill site: Journal of Contaminant Hydrology, v. 67, no. 1-4, p. 269-299, doi:10.1016/S0169-7722(03)00034-2.

Essaid, H.I., Herkelrath, W.N., and Hess, K.M., 1993,

Simulation of fluid distributions observed at a crude oil spill site incorporating hysteresis, oil entrapment, and spatial variability of hydraulic properties: Water Resources Research, v. 29, no. 6, p. 1753-1770, 93WR00370, doi:10.1029/93WR00370.

Essaid, H.I., and Hess, K.M., 1993,

Monte Carlo simulations of multiphase flow incorporating spatial variability of hydraulic properties: Ground Water, v. 31, no. 1, p. 123-134.

Friedly, J.C., Davis, J.A., and Kent, D.B., 1995,

Modeling hexavalent chromium reduction in groundwater in field-scale transport and laboratory batch experiments: Water Resources Research, v. 31, no. 11, p. 2783-2794, 95WR02104, doi:10.1029/95WR02104.

Friedly, J.C., Kent, D.B., and Davis, J.A., 2002,

Simulation of the mobility of metal-EDTA complexes in groundwater--The influence of contaminant metals: Environmental Science and Technology, v. 36, no. 3, p. 355-363, doi:10.1021/es010926m.

Gandhi, N., Bhavsar, S.P., Diamond, M.L., Kuwabara, J.S., Marvin-DiPasquale, M., and Krabbenhoft, D.P., 2007,

Development of a mercury speciation, fate and biotic uptake (BIOTRANSPEC) model--Application to Lahontan Reservoir (Nevada, USA): Environmental Toxicology and Chemistry, v. 26, no. 11, p. 2,260-2,273, doi:10.1897/06-468R.1.

Glynn, P.D., 2003,

Modeling Np and Pu transport with a surface complexation model and spatially variant sorption capacities--implications for reactive transport modeling and performance assessments of nuclear waste disposal sites: Computers and Geosciences, v. 29, no. 3, p. 331-349, doi:10.1016/S0098-3004(03)00009-8.

Godsy, E.M., Goerlitz, D.F., and Grbic'-Galic', D., 1992,

Methanogenic biodegradation of creosote contaminants in natural and simulated ground water ecosystems: Ground Water, v. 30, p. 232-242.

Godsy, E.M., Goerlitz, D.F., and Grbic'-Galic', D., 1992,

Anaerobic biodegradation of creosote contaminants in natural and simulated ground water ecosystems: Ground Water, v. 30, p. 232-242.

Goff, K., Lewis, M.E., Person, M.A., and Konikow, L.F., 1998,

Simulated effects of irrigation on salinity in the Arkansas River Valley in Colorado: Ground Water, v. 36, no. 1, p. 76-86.

Gooseff, M.N., Bencala, K.E., Scott, D.T., Runkel, R.L., and McKnight, D.M., 2005,

Sensitivity analysis of conservative and reactive stream transient storage models applied to field data from multiple-reach experiments: Advances in Water Resources, v. 28, no. 5, p. 479-492, doi:10.1016/j.advwatres.2004.11.012.

Gooseff, M.N., McKnight, D.M., and Runkel, R.L., 2004,

Reach-scale cation exchange controls on major ion chemistry of an Antarctic glacial meltwater stream: Aquatic Geochemistry, v. 10, no. 3-4, p. 221-238, doi:10.1007/s10498-004-2260-4.

Gorelick, S.M., Voss, C.I., Gill, P.E., Murray, W., Saunders, M.S., and Wright, M.H., 1984,

Aquifer reclamation design--The use of contaminant transport simulation combined with nonlinear programming: Water Resources Research, v. 20, no. 4, p. 415-427, 3W1963, doi:10.1029/WR020i004p00415.

Grégoire, C., Joesten, P.K., and Lane, J.W., Jr., 2006,

Use of borehole radar reflection logging to monitor steam-enhanced remediation in fractured limestone--Results of numerical modelling and a field experiment: Journal of Applied Geophysics, v. 60, no. 1, p. 41-54, doi:10.1016/j.jappgeo.2005.12.006.

Grove, D.B., and Stollenwerk, K.G., 1985,

Modeling the rate-controlled sorption of hexavalent chromium: Water Resources Research, v. 21, no. 11, p. 1703-1709, 5W4095, doi:10.1029/WR021i011p01703.

Guarini, J.-M., Cloern, J.E., Edmunds, J., and Gros, P., 2002,

Spatial variability of microphytobenthos photosynthesis in tidal estuaries--A modeling approach with applications to San Francisco Bay: Estuaries, v. 25, p. 409-417.

Hanson, R.T., and Dettinger, M.D., 2005,

Ground-water/surface-water responses to global climate simulations, Santa Clara-Calleguas basin, Ventura County, California, 1950-93: Journal of the American Water Resources Association, v. 41, no. 3, p. 517-536, doi:10.1111/j.1752-1688.2005.tb03752.x.

Harte, P.T., Konikow, L.F., and Hornberger, G.Z., 2006,

Simulation of solute transport across low-permeability barrier walls: Journal of Contaminant Hydrology, v. 85, no. 3-4, p. 247-270, doi:10.1016/j.jconhyd.2006.02.012.

Harvey, J.W., Conklin, M.H., and Koelsch, R.S., 2003,

Predicting changes in hydrologic retention in an evolving semi-arid alluvial stream: Advances in Water Resources, v. 26, no. 9, p. 939-950, doi:10.1016/S0309-1708(03)00085-X.

Harvey, R.W., and Garabedian, S.P., 1992,

Response to comment on Use of colloid filtration theory in modeling movement of bacteria through a contaminated sandy aquifer: Environmental Science and Technology, v. 26, no. 2, p. 401-402, doi:10.1021/es00026a026.

Harvey, R.W., and Garabedian, S.P., 1991,

Use of colloid filtration theory in modeling movement of bacteria through a contaminated sandy aquifer: Environmental Science and Technology, v. 25, no. 1, p. 178-185, doi:10.1021/es00013a021.

Harvey, R.W., Metge, D.W., Kinner, N., and Mayberry, N., 1997,

Physiological considerations in applying laboratory-determined buoyant densities to predictions of bacterial and protozoan transport in groundwater--Results of in-situ and laboratory tests: Environmental Science and Technology, v. 31, no. 1, p. 289-295, doi:10.1021/es960461d.

Healy, R.W., Striegl, R.G., Russell, T.F., Hutchinson, G.L., and Livingston, G.P., 1996,

Numerical evaluation of static-chamber measurements of soil-atmospheric gas exchange--Identification of physical processes: Soil Science Society of America Journal, v. 60, no. 2, p. 740-747.

Hsieh, P.A., Tracy, J.V., Neuzil, C.E., Bredehoeft, J.D., and Silliman, S.E., 1981,

A transient method for determining the hydraulic properties of "tight" rocks--1, Theory: lnternational Journal of Rock Mechanics and Mining Science, v. 18, no. 3, p. 245-252.

Hunt, R.J., Steuer, J.J., Mansor, M.T.C., and Bullen, T.D., 2001,

Delineating a recharge area for a spring using numerical modeling, Monte Carlo techniques, and geochemical investigation: Ground Water, v. 39, no. 5, p. 702-712, doi:10.1111/j.1745-6584.2001.tb02360.x.

Hutchinson, G.L., Livingston, G.P., Healy, R.W., and Striegl, R.G., 2000,

Chamber measurement of surface-atmosphere trace gas exchange--Numerical evaluation of dependence on soil interfacial layer, and source/sink products: Journal of Geophysical Research, v. 105, no. D7, p. 8865-8875.

Jakeman, A.J., Hornberger, G.M., Littlewood, I.G., Whitehead, P.G., Harvey, J.W., and Bencala, K.E., 1992,

A systematic approach to modelling the dynamic linkage of climate, physical catchment descriptors, and hydrologic response components: Mathematics and Computers in Simulation, v. 33, p. 359-366, doi:10.1016/0378-4754(92)90122-W.

Karapanagioti, H., Gossard, C.M., Strevett, K.A., Kolar, R.L., and Sabatini, D.A., 2001,

Model coupling intraparticle diffusion/sorption, nonlinear sorption, and biodegradation processes: Journal of Contaminant Hydrology, v. 48, no. 1-2, p. 1-21, doi:1016/S0169-7722(00)00179-0.

Kent, D.B., Abrams, R.H., Davis, J.A., Coston, J.A., and LeBlanc, D.R., 2000,

Modeling the influence of variable pH on the transport of zinc in a contaminated aquifer using semiempirical surface complexation models: Water Resources Research, v. 36, no. 12, p. 3411-3425, 2000WR900244, doi:10.1029/2000WR900244.

Kent, D.B., Wilkie, J.A., and Davis, J.A., 2007,

Modeling the movement of a pH perturbation and its impact on adsorbed zinc and phosphate in a wastewater-contaminated aquifer: Water Resources Research, v. 43, no. 7, W07440, doi:10.1029/2005WR004841.

Killingstad, M.W., Widdowson, M.A., and Smith, R.L., 2002,

Modeling enhanced in situ denitrification in groundwater: Journal of Environmental Engineering, v. 128, no. 6, p. 491-504, doi:10.1061/(ASCE)0733-9372(2002)128:6(491).

Kim, B.E., Jackman, A.P., and Triska, F.J., 1992,

Modeling biotic uptake by periphyton and transient hyporrheic storage on nitrate in a natural stream: Water Resources Research, v. 28, no. 10, p. 2743-2752.

Konikow, L.F., 1992,

Discussion of "The modeling process and model validation" by Chin-Fu Tsang: Ground Water, v. 30, no. 4, p. 622-623.

Konikow, L.F., 1981,

Role of numerical simulation in analysis of groundwater quality problems: The Science of the Total Environment, v. 21, p. 299-312, doi:10.1016/0048-9697(81)90163-7.

Konikow, L.F., 1981,

Role of solute transport models in the analysis of groundwater salinity problems in agricultural areas: Agricultural Water Management, v. 4, p. 187-205.

Konikow, L.F., and Ewing, R.C., 1999,

Is a probabilistic performance assessment enough?: Ground Water, v. 37, no. 4, p. 481-482.

Konikow, L.F., and Hornberger, G.Z., 2006,

Modeling effects of multinode wells on solute transport: Ground Water, v. 44, no. 5, p. 648-660, doi:10.1111/j.1745-6584.2006.00231.x.

Konikow, L.F., and Mercer, J.M., 1988,

Groundwater flow and transport modeling: Journal of Hydrology, v. 100, no. 2, p. 379-409.

Konikow, L.F., and Sanford, W.E., 1998,

Reply to comment by E. Holzbecher on "Constant-concentration boundary condition--Lessons from the HYDROCOIN variable-density groundwater benchmark problem: Water Resources Research, v. 34, no. 10, p. 2775-2778.

Konikow, L.F., Sanford, W.E., and Campbell, P.J., 1997,

Constant-concentration boundary condition--Lessons from the HYDROCOIN variable-density groundwater benchmark problem: Water Resources Research, v. 33, no. 10, p. 2253-2262.

Kuwabara, J.S., Topping, B.R., Woods, P.F., and Carter, J.L., 2007,

Free zinc ion and dissolved orthophosphate effects on phytoplankton from Coeur d'Alene Lake, Idaho: Environmental Science and Technology, v. 41, no. 8, p. 2811-2817, doi:10.1021/es062923l.

LaBaugh, J.W., and Winter, T.C., 1984,

The impact of uncertainties in hydrologic measurement on phosphorus budgets and empirical models for two Colorado reservoirs: Limnology and Oceanography, v. 29, p. 322-339.

Lahvis, M.A., and Baehr, A.L., 1996,

Estimation of rates of aerobic hydrocarbon biodegradation by simulation of gas transport in the unsaturated zone: Water Resources Research, v. 32, no. 7, p. 2231-2249, 96WR00805, doi:10.1029/96WR00805.

Lane, J.W., Jr., Buursink, M.L., Haeni, F.P., and Versteeg, R.J., 2000,

Evaluation of ground-penetrating radar to detect free-phase hydrocarbons in fractured rocks--Results of numerical modeling and physical experiments: Ground Water, v. 38, no. 6, p. 929-938.

Lewis, F., Voss, C.I., and Rubin, J., 1987,

Solute transport with equilibrium aqueous complexation and either sorption or ion exchange--Simulation methodology and applications: Journal of Hydrology, v. 90, p. 81-115.

Liu, S., Yen, S., and Kolpin, D.W., 1996,

Atrazine concentrations in near-surface aquifers--A censored regression approach: Journal of Environmental Quality, v. 25, no. 5, p. 992-999.

Lucas, L.V., and Cloern, J.E., 2002,

Effects of tidal shallowing and deepening on phytoplankton production dynamics--a modeling study: Esturaries, v. 25, p. 497-507.

Lucas, L.V., Cloern, J.E., Koseff, J.R., Monismith, S.G., and Thompson, J.K., 1998,

Does the Sverdrup critical depth model explain bloom dynamics in estuaries?: Journal of Marine Research, v. 56, no. 2, p. 375-415.

Luoma, S.N., and Davis, J.A., 1983,

Requirements for modeling trace metal partitioning in oxidized estuarine sediments: Marine Chemistry, v. 12, p. 159-181.

Luoma, S.N., and Rainbow, P.S., 2005,

Why is metal bioaccumulation so variable? Biodynamics as a unifying concept: Environmental Science and Technology, v. 39, no. 7, p. 1921-1931, doi:10.1021/es048947e.

Mace, A., Rudolph, D.L., and Kachanoski, R.G., 1998,

Suitability of parametric models to describe the hydraulic properties of an unsaturated coarse sand and gravel: Ground Water, v. 36, no. 3, p. 465-475.

Masterson, J.P., Walter, D.A., and LeBlanc, D.R., 2004,

Transient analysis of the source of water to wells--Cape Cod, Massachusetts: Ground Water, v. 42, no. 1, p. 126-134, doi:10.1111/j.1745-6584.2004.tb02458.x.

Maxwell, R.M., Welty, C., and Harvey, R.W., 2007,

Revisiting the Cape Cod bacteria injection experiment using a stochastic modeling approach: Environmental Science and Technology, v. 41, no. 15, p. 5548-5558, doi:10.1021/es062693a.

Mayers, C.J., Andraski, B.J., Cooper, C.A., Wheatcraft, S.W., Stonestrom, D.A., and Michel, R.L., 2005,

Modeling tritium transport through a deep unsaturated zone in an arid environment: Vadose Zone Journal, v. 4, p. 967-976, doi:10.2136/vzj2004.0179.

McIsaac, G.F., David, M.B., Gertner, G.Z., and Goolsby, D.A., 2002,

Relating net nitrogen input in the Mississippi River Basin to nitrate flux in the Lower Mississippi River--A comparison of approaches: Journal of Environmental Quality, v. 31, p. 1610-1622.

McMahon, P.B., and Chapelle, F.H., 1991,

Geochemistry of dissolved inorganic carbon in a coastal plain aquifer--2, Modeling carbon sources, sinks, and śC evolution: Journal of Hydrology, v. 127, no. 1-4, p. 109-135.

Miller, M.P., McKnight, D.M., Cory, R.M., Williams, M.W., and Runkel, R.L., 2006,

Hyporheic exchange and fulvic acid redox reactions in an alpine stream/wetland ecosystem, Colorado Front Range: Environmental Science and Technology, v. 40, no. 19, p. 5943-5949, doi:10.1021/es060635j.

Molins, S., and Mayer, K.U., 2007,

Coupling between geochemical reactions and multicomponent gas and solute transport in unsaturated media--A reactive transport modeling study: Water Resources Research, v. 45, no. 5, W05435, doi:10.1029/2006WR005206.

Morin, R.H., 2005,

Hydrologic properties of coal beds in the Powder River Basin, Montana--I. Geophysical log analysis: Journal of Hydrology, v. 308, p. 227-241, doi:10.1016/j.jhydrol.2004.11.006.

Mueller, D.K., Ruddy, B.C., and Battaglin, W.A., 1997,

Logistic model of nitrate in streams of the upper-midwestern United States: Journal of Environmental Quality, v. 26, no. 5, p. 1223-1230.

Neuzil, C.E., Cooley, C., Silliman, S.E., Bredehoeft, J.D., and Hsieh, P.A., 1981,

A transient method for determining the hydraulic properties of "tight" rocks--II, Application: International Journal of Rock Mechanics and Mining Sciences, v. 18, no. 3, p. 253-258.

Nimmo, J.R., 1997,

Modeling structural influences on soil water retention: Soil Science Society of America Journal, v. 61, no. 3, p. 712-719.

Niswonger, R.G., Prudic, D.E., Pohll, G., and Constantz, J., 2005,

Incorporating seepage losses into the unsteady streamflow equations for simulating intermittent flow along mountain front streams: Water Resources Research, v. 41, W06006, doi:10.1029/2004WR003677.

Nordstrom, D.K., 1988,

Book review--"Coupled processes associated with nuclear waste repositories edited by Chin-Fu Tsang, Academic Press, 1987, 801 pp. (ISBN 0127016201)": Geochimica et Cosmochimica Acta, v. 52, no. 8, p. 2185, doi:10.1016/0016-7037(88)90201-3.

Nordstrom, D.K., McNutt, R.H., Puigdomenech, I., Smellie, J.A.T., and Wolf, M., 1992,

Ground water chemistry and geochemical modeling of water-rock interactions at the Osamu Utsumi mine and the Morro do Ferro analogue study sites, Pocos de Caldas, Minas Gerais, Brazil: Journal of Geochemical Exploration, v. 45, no. 1-3, p. 249-287, doi:10.1016/0375-6742(92)90127-T

Ostendorf, D.W., 1986,

Modeling contamination of shallow unconfined aquifers through infiltration beds: Water Resources Research, v. 22, no. 3, p. 375-382, 5W4068, doi:10.1029/WR022i003p00375.

Paillet, F.L., 1998,

Flow modeling and permeability estimation using borehole flow logs in heterogeneous fractured formations: Water Resources Research, v. 34, no. 5, p. 997-1010, 98WR00268, doi:10.1029/98WR00268.

Parrish, R.S., and Smith, C.N., 1990,

A method for testing whether model predictions fall within a prescribed factor of true values, with an application to pesticide leaching: Ecological Modeling, v. 51, p. 59-72.

Peng, W.-S., Hampton, D.R., Konikow, L.F., Kambham, K.K.R., and Benegar, I.J., 2000,

Can contaminant transport models predict breakthrough?: Ground Water Monitoring and Remediation, v. 20, p. 104-113.

Person, M.A., and Konikow, L.F., 1986,

The recalibration and predictive reliability of a solute-transport model of an irrigated stream-aquifer system: Journal of Hydrology, v. 87, p. 145-165.

Pollock, D.W., 1986,

Simulation of fluid flow and energy transport processes associated with high-level radioactive waste disposal in unsaturated alluvium: Water Resources Research, v. 22, no. 5, p. 765-775, 5W4163, doi:10.1029/WR022i005p00765.

Rathbun, R.E., Stephens, D.W., Shultz, D.J., and Tai, D.Y., 1989,

Fate of acetone in an outdoor model stream in southern Mississippi: Journal of Hydrology, v. 104, p. 181-209.

Rathbun, R.E., Stephens, D.W., and Tai, D.Y., 1991,

Fate of acetone in an outdoor model stream with a nitrate supplement, southern Mississippi: Journal of Hydrology, v. 123, p. 225-242.

Reddy, M.M., and Aiken, G.R., 2001,

Fluvic acid-sulfide ion competition for mercury ion binding in the Florida everglades: Water, Air, and Soil Pollution, v. 132, p. 89-104, doi:10.1023/A:1012073503678.

Rossi, C., and Nimmo, J.R., 1996,

Modelli modificati di curve di ritenzione idrica in mezzi porosi non saturi: Quaderni di Geologia Applicata, v. 3, p. 127-136.

Rossi, C., and Nimmo, J.R., 1994,

Modeling of soil water retention from saturation to oven dryness: Water Resources Research, v. 30, p. 701-708.

Rubin, J., 1990,

Solute transport with multisegment, equilibrium-controlled reactions--A feed forward simulation method: Water Resources Research, v. 26, no. 9, p. 2029-2055, doi:10.1029/WR026i009p02029.

Rubin, Y., and Ezzedine, S., 1997,

The travel times of solutes at the Cape Cod tracer experiment--Data analysis, modeling, and structural parameters inference: Water Resources Research, v. 33, no. 7, p. 1537-1547, 96WR00016, doi:10.1029/96WR00016.

Runkel, R.L., 2007,

Toward a transport-based analysis of nutrient spiraling and uptake in streams: Limnology and Oceanography--Methods, v. 5, p. 50-62.

Runkel, R.L., and Kimball, B.A., 2002,

Evaluating remedial alternatives for an acid mine drainage stream--Application of a reactive transport model: Environmental Science and Technology, v. 36, no. 5, p. 1093-1101, doi:10.1021/es0109794.

Runkel, R.L., Kimball, B.A., Walton-Day, K., and Verplanck, P.L., 2007,

A simulation-based approach for estimating premining water quality--Red Mountain Creek, Colorado: Applied Geochemistry, v. 22, no. 9, p. 1899-1918, doi:10.1016/j.apgeochem.2007.03.054.

Runkel, R.L., McKnight, D.M., and Rajaram, H., 2003,

Modeling hyporheic zone processes: Advances in Water Resources, v. 26, no. 9, p. 901-905, doi:10.1016/S0309-1708(03)00079-4.

Sanford, W.E., and Konikow, L.F., 1989,

Simulation of calcite dissolution and porosity changes in saltwater mixing zones in coastal aquifers: Water Resources Research, v. 25, no. 4, p. 655-667.

Sanford, W.E., Konikow, L.F., Rowe, G.L., and Brantley, S.L., 1995,

Groundwater transport of crater-lake brine at Poas Volcano, Costa Rica: Journal of Volcanology and Geothermal Research, v. 64, p. 269-293, doi:10.1016/0377-0273(94)00080-Z.

Sanford, W.E., Plummer, L.N., McAda, D.P., Bexfield, L.M., and Anderholm, S.K., 2004,

Hydrochemical tracers in the middle Rio Grande Basin, USA: 2. Calibration of a ground-water flow model: Hydrogeology Journal, v. 12, no. 4, p. 389-407, doi:10.1007/s10040-004-0326-4.

Scanlon, B.R., Keese, K., Reedy, R.C., Šimůnek, J., and Andraski, B.J., 2003,

Variations in flow and transport in thick desert vadose zones in response to paleoclimatic forcing (0-90 kyr)--Field measurements, modeling, and uncertainties: Water Resources Research, v. 39, no. 7, p. 3-1 to 3-17, 2002WR001604, doi:10.1029/2002WR001604.

Schlekat, C.E., Purkerson, D.G., and Luoma, S.N., 2004,

Modeling selenium bioaccumulation through arthropod food webs in San Francisco Bay, California, USA: Environmental Toxicology and Chemistry, v. 23, no. 12, p. 3003-3010, doi:10.1897/03-4.1.

Scholl, M.A., 2000,

Effects of heterogeneity in aquifer permeability and biomass on biodegradation rate calculations--Results from numerical simulations: Ground Water, v. 38, no. 5, p. 702-712.

Scholl, M.A., Cozzarelli, I.M., and Christenson, S.C., 2006,

Recharge processes drive sulfate reduction in an alluvial aquifer contaminated with landfill leachate: Journal of Contaminant Hydrology, v. 86, no. 3-4, p. 239-261, doi:10.1016/j.jconhyd.2006.03.005.

Scott, D.T., Gooseff, M.N., Bencala, K.E., and Runke., R.L., 2003,

Automated calibration of a stream solute transport model--Implications for interpretation of biogeochemical parameters: Journal of the North American Benthological Society, v. 22, no. 4, p. 492-510.

See, R.B., Naftz, D.L., and Qualls, C.L., 1992,

GIS-assisted regression analysis to identify sources of selenium in streams: Water Resources Bulletin, v. 28, no. 2, p. 315-330, doi:10.1111/j.1752-1688.1992.tb03997.x.

Shapiro, A.M., and Anderson, J., 1985,

Simulation of steady-state flow in three-dimensional fracture networks using the boundary-element method: Advances in Water Resources, v. 8, p. 106-110.

Sheibley, R.W., Jackman, A.P., Duff, J.H., and Triska, F.J., 2003,

Numerical modeling of coupled nitrification-denitrification in sediment perfusion cores from the hyporheic zone of the Shingobee River, Minnesota: Advances in Water Resources, v. 26, no. 9, p. 977-987, doi:10.1016/S0309-1708(03)00088-5.

Simpson, J.J., Dettinger, M.D., Gerhke, F., McIntyre, T.J., and Hufford, G.I., 2004,

Hydrologic scales, cloud variability, remote sensing and models--Implications for forecasting snowmelt and streamflow: Weather and Forecasting, v. 19, p. 251-276, doi:10.1175/1520-0434(2004)019<0251:HSCVRS>2.0.CO;2.

Smith, C.N., Parrish, R.S., and Brown, D.S., 1991,

Conducting field studies for testing pesticide leaching models: International Journal of Environmental Analytical Chemistry, v. 39, p. 3-21.

Squillace, P.J., 1996,

Observed and simulated movement of bank-storage water: Ground Water, v. 34, no. 1, p. 121-134.

Stollenwerk, K.G., 1998,

Molybdate transport in a chemically complex aquifer--Field measurements compared with solute-transport model predictions: Water Resources Research, v. 34, no. 10, p. 2727- 2740, 98WR02163, doi:10.1029/98WR02163.

Stollenwerk, K.G., 1996,

Simulation of phosphate transport in sewage-contaminated groundwater, Cape Cod, Massachusetts: Applied Geochemistry, v. 11, no. 1-2, p. 317-324, doi:10.1016/0883-2927(95)00041-0.

Stollenwerk, K.G., 1995,

Modeling the effects of variable groundwater chemistry on adsorption of molybdate: Water Resources Research, v. 31, no. 2, p. 347-357, 94WR02675, doi:10.1029/94WR02675.

Stollenwerk, K.G., Breit, G.N., Welch, A.H., Yount, J.C., Whitney, J.W., Foster, A.L., Uddin, M.N., Majumder, R.K., and Ahmed, N., 2007,

Arsenic attenuation by oxidized aquifer sediments in Bangladesh: Science of the Total Environment, v. 379, no. 2-3, p. 133-150, doi:10.1016/j.scitotenv.2006.11.029 (Arsenic in the Environment, Biology and Chemistry--Arsenic in the Environment Special Issue, Bhattacharya, P., Welch, A.H., Stollenwerk, K.G., McLaughlin, M.J., Bundschuh, J., and Panaullah, G., eds.).

Tauler, R., Bercelo, D., and Thurman, E.M., 2000,

Multivariate correlation between concentrations of selected herbicides and derivatives in outflows from selected U.S. midwestern reservoirs: Environmental Science and Technology, v. 34, no. 16, p. 3307-3314, doi:10.1021/es000884m.

Troutman, B.M., 1985,

Errors and parameter estimation in precipitation runoff modeling--1, Theory: Water Resources Research, v. 21, no. 8, p. 1195-1213, 5W0350, doi:10.1029/WR021i008p01195.

Troutman, B.M., 1985,

Errors and parameter estimation in precipitation runoff modeling--2, Case Study: Water Resources Research, v. 21, no. 8, p. 1214-1222, 5W0351, doi:10.1029/WR021i008p01214.

Uncles, R.J., and Peterson, D.H., 1996,

Modeling the long-term salinity field in San Francisco Bay: Continental Shelf Research, v. 16, p. 2005-2039.

Uncles, R.J., and Peterson, D.H., 1995,

A computer model of long-term salinity in San Francisco Bay--Sensitivity to mixing and inflows: Environmental International, v. 21, no. 5, p. 647-656.

Waite, T.D., Davis, J.A., Fenton, B.R., and Payne, T.E., 2000,

Approaches to modelling uranium (VI) adsorption on natural mineral assemblages: Radiochimica Acta, v. 88, p. 687-696.

Waite, T.D., Davis, J.A., Payne, T.E., Waychunas, G.A., and Xu, N., 1994,

Uranium(VI) adsorption to ferrihydrite--Application of a surface complexation model: Geochimica et Cosmochimica Acta, v. 58, no. 24, p. 5465-5478, doi:10.1016/0016-7037(94)90243-7.

Walvoord, M.A., Andraski, B.J., Krabbenhoft, D.P., and Striegl, R.G., 2008,

Transport of elemental mercury in the unsaturated zone from a waste disposal site in an arid region: Applied Geochemistry, v. 23, no. 3, p. 572-583, doi:10.1016/j.apgeochem.2007.12.014.

Walvoord, M.A., Striegl, R.G., Prudic, D.E., and Stonestrom, D.A., 2005,

CO₂ dynamics in the Amargosa Desert--Fluxes and isotopic speciation in a deep unsaturated zone: Water Resources Research, v. 41, no. 2, W02006, doi:10.1029/2004WR003599.

Wang, P.F., Cheng, R.T., Richter, K., Gross, E.S., and Gartner, J.W., 1998,

Modeling tidal hydrodynamics of San Diego Bay, California: Journal of the American Water Resources Association, v. 34, no. 5, p. 1123-1140, doi:10.1111/j.1752-1688.1998.tb04159.x.

Waychunas, G.A., Fuller, C.C., Davis, J.A., and Rehr, J.J., 2003,

Surface complexation and precipitate geometry of aqueous Zn(II) sorption on ferrihydrite--II. XANES analysis and simulation: Geochimica et Cosmochimica Acta, v. 67, p. 1031-1043, doi:10.1016/S0016-7037(02)01280-2.

Weeks, E.P., 2005,

Hydrologic properties of coal beds in the Powder River Basin, Montana--II. Aquifer test analysis: Journal of Hydrology, v. 308, p. 242-257, doi:10.1016/j.jhydrol.2004.11.002.

Widdowson, M.A., Mendez, E., and Chapelle, F.H., 2007,

Estimating cleanup times for groundwater contamination remediation strategies: Journal of the American Water Works Association, v. 99, no. 3, p. 40-42, 44, 46.

Winter, T.C., and Pfannkuch, H.O., 1984,

Numerical simulation analysis, pt. 2 of Effect of anisotropy and groundwater system geometry on seepage through lakebeds: Journal of Hydrology, v. 75, p. 239-253.

Wood, T.M., Baptista, A.M., Kuwabara, J.S., and Flegal, A.R., 1995,

Diagnostic modeling of trace metal partitioning in South San Francisco Bay: Limnology and Oceanography, v. 40, no. 2, p. 345-358.

Wood, W.W., 1985,

Origin of caves and other solution openings in the unsaturated (vadose) zone of carbonate rocks--A model for C02 generation: Geology, v. 13, p. 822-824.

Worrall, F., 2001,

A molecular topology approach to predicting pesticide pollution of groundwater: Environmental Science and Technology, v. 35, no. 11, p. 2282-2287, doi:10.1021/es001593g.

Yager, R.M., Kappel, W.M., and Plummer, L.N., 2007,

Origin of halite brine in the Onondaga Trough near Syracuse, New York State, USA--Modeling geochemistry and variable-density flow: Hydrogeology Journal, doi:10.1007/s10040-007-0186-9 (Advanced Web release).

Yen, S., Liu, S., and Kolpin, D.W., 1996,

Analysis of nitrate in near-surface aquifers in the midcontinental United States--An application of the inverse hyperbolic sine Tobit model: Water Resources Research, v. 32, no. 10, p. 3003-3011, 96WR02102, doi:10.1029/96WR02102.

Yi, C., Monson, R.K., Zhai, Z., Anderson, D.E., Lamb, B., Allwine, G., Turnipseed, A.A., and Burns, S.P., 2005,

Modeling and measuring the nocturnal drainage flow in a high-elevation, subalpine forest with complex terrain: Journal of Geophysical Research, v. 110, D22303, doi:10.1029/2005JD006282.

Zhang, H., Schwartz, F.W., Wood, W.W., Garabedian, S.P., and LeBlanc, D.R., 1998,

Simulation of variable-density flow and transport of reactive and nonreactive solutes during a tracer test at Cape Cod, Massachusetts: Water Resources Research, v. 34, no. 1, p. 67-82, 97WR02918, doi:10.1029/97WR02918.

Dettinger, M.D., Peterson, D.H., Diaz, H.F., and Cayan, D.R., 1997,

Forecasting the spring runoff pulses from the Sierra Nevada: Interagency Ecosystem Program for the Sacramento-San Juaquin Estuary Newsletter, v. 10, no. 3, Summer 1997, p. 32-35.

Knowles, N., Cayan, D., Ingram, L., Peterson, D., and Uncles, R., 1997,

Diagnosing the flood of 1997 in San Francisco Bay with observation and model results: Interagency Ecology Newsletter (DWR), v. 10, no. 3, p. 28-31.

Knowles, N., Cayan, D.R., Peterson, D.H., and Uncles, R.J., 1998,

Simulated efforts of delta out flow on the bay--1998 compared to other years: Interagency Ecological Program for the Sacramento-San Joaquin Estuary Newsletter, v. 11, no. 4, p. 29-32.

Knowles, N., Peterson, D.H., Uncles, R.J., and Cayan, D.R., 1995,

Modeling and predicting intertidal variations in the salinity field in the bay/delta: Interagency Ecological Studies Program Newsletter, p. 8-10.

Luoma, S.N., 1995,

Pathway models could aid management of contaminants: Interagency Ecological Program for the Sacramento-San Joaquin Estuary Newsletter, California Department of Water Resources, p. 6-8.

McDonald, M.G., and Konikow, L.F., 2002,

Let there be standing--An editorial: The AGWSE Newszine, Newsletter of the Association of Ground Water Scientists and Engineers, v. February 2002.

Peterson, D.H., Cayan, D.R., Smith, R.E., Dettinger, M.D., and Riddle, L., 2001,

An experimental forecast of maximum daily snowmelt discharge for the year 2001: Scripps Institution of Oceanography, California Applications Program, December 18, 2001.

Battaglin, W.A., 1993,

Use of volume modelling techniques to estimate agricultural chemical mass in groundwater, Minnesota, USA: International Association of Hydrological Sciences, IAHS Publication No. 211, 591-599 p.

Davis, J.A., and Curtis, G.P., 2003,

Application of surface complexation modeling to describe uranium (VI) adsorption and retardation at the uranium mill tailings site at Naturita, Colorado: U.S. Nuclear Regulatory Commission Report NUREG CR-6820.

Kwicklis, E., Wolfsberg, A., Stauffer, P., Walvoord, M., and Sully, M., 2006,

Numerical evaluation of liquid and vapor fluxes at the Nevada Test Site Area 3 radioactive-waste management site using hydrologic data and natural environmental tracers: Los Alamos National Laboratory Report.

Lahvis, M.A., and Rehmann, L.C., 2000,

Simulation of transport of methyl tert-butyl ether (MTBE) to groundwater from small volume releases of gasoline in the vadose zone: American Petroleum Institute Soil and Groundwater Research Bulletin 10, 8 p.

McBride, G.B., Vant, W.N., Cloern, J.E., and Liley, J.B., 1993,

Development of a model of phytoplankton blooms in Manukau Harbour: National Institute of Water and Atmospheric Research Ecosystems Publication 3, 52 p.

Peterson, D.H., Cayan, D.R., Smith, R.E., Dettinger, M.D., and Riddle, L.G., 2002,

Retrospective appraisal of the 2000 maximum flow forecasts: California Applications Program, Scripps Institute of Oceanography.

Plummer, L.N., Sanford, W.E., Bexfield, L.M., Anderholm, S.K., and Busenberg, E., 2004,

Using geochemical data and aquifer simulation to characterize recharge and groundwater flow in the Middle Rio Grande Basin, New Mexico, in Hogan, J.F., Phillips, F.M., and Scanlon, B.R., eds., Groundwater Recharge in a Desert Environment--The Southwestern United States: Washington, D.C., American Geophysical Union Water Science and Application Series, volume 9, p. 185-216.

Presser, T.S., and Luoma, S.N., 2007,

Forecasting selenium discharges to the San Francisco Bay-Delta Estuary--Ecological effects of a proposed San Luis Drain extension: Professional Paper 1646, 196 p.

U.S. Environmental Protection Agency Modeling Project Subcommittee (Science Advisory Board), 1993,

Review of the assessment framework for ground-water model applications: Environmental Protection Agency, 12 p.

Anderman, E.R., 1996,

The use of advective-transport observations to improve ground-water flow parameter estimation: Golden, Colorado School of Mines, Department of Geology and Geological Engineering, unpublished Ph.D. thesis, 277 p.

Battaglin, W.A., 1992,

Estimation of agricultural chemical mass in ground water by volume modeling techniques: Golden, Colorado School of Mines, M.E. thesis, ER-4284, 157 p.

Brown, J.G., 1996,

Movement of metal contaminants in ground water in the Pinal Creek basin, Arizona---Model assessment and simulation of reactive transport: Tucson, University of Arizona, M.S. thesis, 236 p.

Choi, J., 1998,

Transport modeling of metal contaminants in a stream-aquifer system: Tucson, University of Arizona, Department of Hydrology and Water Resources, Ph.D. Dissertation, 225 p.

Coontz, R.J., 1990,

Simulation of groundwater flow at the Bemidji, Minnesota crude-oil spill site, and implications for advective transport of dissolved contaminants: Stanford, Calif., Stanford University, M.S. thesis, 80 p.

Dillard, L.A., 1998,

Investigating the physics of dissolution of nonaqueous phase liquids--simulation from pore network to field scale: Stanford, Calif., Stanford University, Ph.D. Thesis, 178 p.

Dillard, L.A., 1993,

Multiphase flow modeling of a crude-oil spill site using geostatistical simulation of soil hydraulic properties: Stanford, Calif., Stanford University, M.S. thesis, 115 p.

Duncan, J.J., 1997,

Use of MODFLOW to simulate the effects of model parameters on groundwater flowpaths near surface water bodies--Worcester, Mass.: Worcester, Mass., Worcester Polytechnic Institute, Department of Civil Engineering, unpublished M.S. thesis, variously p.

Goode, D.J., 1998,