Publications from the Toxic Substances Hydrology Program Published in 2008

Alpers, C.N., Stewart, A.R., Saiki, M.K., Marvin-DiPasquale, M., Topping, B.R., Rider, K.M., Gallanthine, S.K., Kester, C.A., Rye, R.O., Antweiler, R.C., and DeWild, J.F., 2008,

Environmental factors affecting mercury in Camp Far West Reservoir, 2001-03: U.S. Geological Survey Scientific Investigations Report 2006-5008, 358 p.

Alvarez, D.A., Cranor, W.L., Perkins, S.D., Schroeder, V.L., Werner, S.L., Furlong, E.T., and Holmes, J., 2008,

Investigation of organic chemicals potentially responsible for mortality and intersex in fish of the North Fork of the Shenandoah River, Virginia, during spring of 2007: U.S. Geological Survey Open-File Report 2008-1093, 16 p.

Alvarez, D.A., Cranor, W.L., Perkins, S.D., Schroeder, V.L., Werner, S.L., Furlong, E.T., Kain, D., and Brent, R., 2008,

Reconnaissance of persistent and emerging contaminants in the Shenandoah and James River Basins, Virginia, during Spring of 2007: U.S. Geological Survey Open-File Report 2008-1231, 19 p.

Amos, R.T., and Blowes, D.W., 2008,

Versatile direct-push profiler for the investigation volatile compounds near the water table: Water Resources Research, v. 44, no. 1, p. 1-9, W00D17, doi:10.1029/2008WR006936.

Antweiler, R.C., and Taylor, H.E., 2008,

Evaluation of statistical treatments of left-censored environmental data using coincident uncensored data sets--I. Summary statistics: Environmental Science and Technology, v. 42, no. 10, p. 3,732-3,738, doi:10.1021/es071301c.

Báez-Cazull, S.E., McGuire, J.T., Cozzarelli, I.M., and Voytek, M.A., 2008,

Determination of dominant biogeochemical processes in a contaminated aquifer-wetland system using multivariate statistical analysis: Journal of Environmental Quality, v. 37, no. 1, p. 30-46, doi:10.2134/jeq2007.0169.

Barber, L.B., 2008,

Fate of consumer-product chemicals in the subsurface environment--25 years of research on Cape Cod, Massachusetts, USA, in Trefry, M.G., ed., Groundwater Quality 2007--Securing Groundwater Quality in Urban and Industrial Environments: International Association of Hydrological Sciences IAHS Redbook, IAHS Publ. 324, p. 126-132.

Barber, L.B., Meyer, M.T., LeBlanc, D.R., Kolpin, D.W., Bradley, P.M., Chapelle, F.H., and Rubio, F., 2008,

Subsurface fate and transport of sulfamethoxazole, 4-nonylphenol, and 17Β-estradiol, in Trefry, M.G., ed., Groundwater Quality 2007--Securing Groundwater Quality in Urban and Industrial Environments: International Association of Hydrological Sciences IAHS Redbook, IAHS Publ. 324, p. 133-139.

Barnes, K.K., Kolpin, D.W., Focazio, M.J., Furlong, E.T., Meyer, M.T., Zaugg, S.D., Haack, S.K., Barber, L.B., and Thurman, E.M., 2008,

Water-quality data for pharmaceuticals and other organic wastewater contaminants in ground water and in untreated drinking water sources in the United States, 2000-01: U.S. Geological Survey Open-File Report 2008-1293, 6 p. plus tables p.

Barnes, K.K., Kolpin, D.W., Furlong, E.T., Zaugg, S.D., Meyer, M.T., and Barber, L.B., 2008,

A national reconnaissance of pharmaceuticals and other organic wastewater contaminants in the United States--I. Groundwater: Science of the Total Environment, v. 402, no. 2-3, p. 192-200, doi:10.1016/j.scitotenv.2008.04.028.

Barnett, M.O., and Kent, D.B., eds., 2008,

Adsorption of Metals by Geomedia II--Variables, Mechanisms, and Model Applications: Amsterdam, Elsevier, Developments in earth and environmental sciences, v. 7, 474 p., ISBN:978-0-444-53212-1,

Barnett, T.P., Pierce, D.W., Hidalgo, H.G., Bonfils, C., Santer, B.D., Das, T., Bala, G., Wood, A.W., Nozawa, T., Mirin, A.A., Cayan, D.R., and Dettinger, M.D., 2008,

Human-induced changes inĘthe hydrology of the western United States: Science, v. 319, no. 5866, p. 1080-1083, doi:10.1126/science.1152538.

Battaglin, W.A., Kuivila, K., Winton, K., and Meyer, M., 2008,

Occurrence of chlorothalonil, its transformation products, and selected other pesticides in Texas and Oklahoma streams, 2003-2004: U.S. Geological Survey Scientific Investigations Report 2008-5016, 9 p.

Battaglin, W.A., Rice, K.C., Focazio, M.J., Salmons, S., and Barry, R.X., 2008,

The occurrence of glyphosate, atrazine, and other pesticides in vernal pools and adjacent streams in Washington, DC, Maryland, Iowa, and Wyoming, 2005-2006: Environmental Monitoring and Assessment, doi:10.1007/s10661-008-0435-y (Advanced Web release).

Baumann, P.C., LeBlanc, D.R., Blazer, V.S., Meier, J.R., Hurley, S.T., and Kiryu, Y., 2008,

Prevalence of tumors in brown bullhead from three lakes in southeastern Massachusetts, 2002: U.S. Geological Survey Scientific Investigations Report 2008-5198.

Bond, D.L., Davis, J.A., and Zachara, J.M., 2008,

Uranium(VI) release from contaminated vadose zone sediments--Estimation of potential contributions from dissolution and desorption, in Barnett, M.O., and Kent, D.B., eds., Adsorption of Metals by Geomedia II--Variables, Mechanisms, and Model Applications: Amsterdam, Elsevier, v. 375-416, p. 474, ISBN:978-0-444-53212-1.

Borrok, D.M., Nimick, D.A., Wanty, R.B., and Ridley, W.I., 2008,

Isotopic variation of dissolved copper and zinc in stream waters affected by historical mining: Geochimica et Cosmochimica Acta, v. 72, no. 2, p. 329-344, doi:10.1016/j.gca.2007.11.014.

Bove, D.J., Lowers, H.A., Plumlee, G.S., and Verplanck, P.L., 2008,

In-situ acid weathering reactions in areas affected by large-scale and pervasive hydrothermal alteration in the Southern Rocky Mountains (Chapter C), in Verplanck, P.L., ed., Understanding Contaminants Associated with Mineral Deposits: U.S. Geological Survey Circular 2008-1328, p. 14-17.

Boyer, T.H., Singer, P.C., and Aiken, G.R., 2008,

Removal of dissolved organic matter by anion exchange--Effect of dissolved organic matter properties: Environmental Science and Technology, v. 42, no. 19, p. 7,431-7,437, doi:10.1021/es800714d.

Bradley, P.M., Barber, L.B., Kolpin, D.W., McMahon, P.B., and Chapelle, F.H., 2008,

Potential for 4-n-nonylphenol biodegradation in stream sediments: Environmental Toxicology and Chemistry, v. 27, no. 2, p. 260-265, doi:10.1897/07-333.

Bradley, P.M., Chapelle, F.H., and Löffler, F.E., 2008,

Anoxic mineralization--Environmental reality or experimental artifact?: Ground Water Monitoring and Remediation, v. 28, no. 1, p. 47-49, doi:10.1111/j.1745-6592.2007.00186.x.

Breit, G.N., Tuttle, M.L.W., Cozzarelli, I.M., Berry, C.J., Christenson, S.C., and Jaeschke, J.B., 2008,

Results of the chemical and isotopic analyses of sediment and ground water from alluvium of the Canadian river near a closed municipal landfill, Norman, Oklahoma, Part 2: U.S. Geological Survey Open-File Report 2008-1134, 35 p.

Buchwalter, D.B., Cain, D.J., Clements, W.H., and Luoma, S.N., 2008,

Using biodynamic models to reconcile differences between laboratory toxicity tests and field biomonitoring with aquatic insects: Environmental Science and Technology, v. 42, no. 8, p. 3,117-3,117, doi:10.1021/es703130e.

Caine, J.S., Manning, A.H., Philip L. Verplanck, Bove, D.J., Kahn, K.G., and Ge, S., 2008,

U.S. Geological Survey Research in Handcart Gulch, Colorado--An alpine watershed affected by metalliferous hydrothermal alteration (Chapter I), in Verplanck, P.L., ed., Understanding Contaminants Associated with Mineral Deposits: U.S. Geological Survey Circular 2008-1328, p. 50-57.

Cardenas, M.B., Harvey, J.W., Packman, A.I., and Scott, D.T., 2008,

Ground-based thermography of fluvial systems at low and high discharge reveals potential complex thermal heterogeneity driven by flow variation and bioroughness: Hydrologic Processes, v. 22, no. 7, p. 980-986, doi:10.1002/hyp.6932.

Caruso, B.S., Cox, T.J., Runkel, R.L., Velleux, M.L., Bencala, K.E., Nordstrom, D.K., Julien, P.Y., Butler, B.A., Alpers, C.N., Marion, A., and Smith, K.S., 2008,

Metals fate and transport modelling in streams and watersheds--State of the science and USEPA workshop review: Hydrologic Processes, v. 22, no. 19, p. 4011-4021, doi:10.1002/hyp.7114.

Chen, Y., 2008,

Geophysical imaging using electromagnetic and seismic waves: Storrs, Conn., University of Connecticut, Ph.D. dissertation, 108 p.

Choate, L.M., Ranville, J.F., Blumenstein, E.P., and Smith, K.S., 2008,

Simple screening tests to determine the potential metal toxicity of mining-waste leachates (Chapter E), in Verplanck, P.L., ed., Understanding Contaminants Associated with Mineral Deposits: U.S. Geological Survey Circular 2008-1328, p. 24-27.

Christopher, S.F., Mitchell, M.J., McHale, M.R., Boyer, E.W., Burns, D.A., and Kendall, C., 2008,

Factors controlling nitrogen release from two forested catchments with contrasting hydrochemical responses: Hydrologic Processes, v. 22, no. 1, p. 46-62, doi:10.1002/hyp.6632.

Cloern, J.E., and Jassby, A.D., 2008,

Complex seasonal patterns of primary producers at the land-sea interface: Ecology Letters, v. 11, no. 12, p. 1,294-1,303, doi:10.1111/j.1461-0248.2008.01244.x.

Cox, T.J., and Runkel, R.L., 2008,

Eulerian-Lagrangian numerical scheme for simulating advection, dispersion, and transient storage in streams and a comparison of numerical methods: Journal of Environmental Engineering, v. 134, no. 12, p. 996-1005, doi:10.1061/(ASCE)0733-9372(2008)134:12(996).

Croteau, M.-N., and Luoma, S.N., 2008,

A biodynamic understanding of dietborne metal uptake by a freshwater invertebrate: Environmental Science and Technology, v. 42, no. 5, p. 1,801-1,806, doi:10.1021/es7022913.

Day-Lewis, F.D., and Singha, K., 2008,

Geoelectrical inference of mass transfer parameters using temporal moments: Water Resources Research, v. 44, W05201, doi:10.1029/2007WR006750.

Diehl, S.F., Hageman, P.L., and Smith, K.S., 2008,

What is weathering in mine waste? Mineralogic evidence for sources of metals in leachates (Chapter A), in Verplanck, P.L., ed., Understanding Contaminants Associated with Mineral Deposits: U.S. Geological Survey Circular 2008-1328, p. 4-7.

Duris, J.W., and Beeler, S., 2008,

Fecal-indicator bacteria and escherichia coli pathogen data collected near a novel sub-irrigation water-treatment system in Lenawee County, Michigan, June-November 2007: U.S. Geological Survey Open-File Report 2008-1025, 13 p.

Engle, M.A., Tate, M.T., Krabbenhoft, D.P., Kolker, A., Olson, M.L., Edgerton, E.S., DeWild, J.F., and McPherson, A.K., 2008,

Characterization and cycling of atmospheric mercury along the central US Gulf Coast: Applied Geochemistry, v. 23, no. 3, p. 419-437, doi:10.1016/j.apgeochem.2007.12.024.

Essaid, H.I., Zamora, C.M., McCarthy, K.A., Vogel, J.R., and Wilson, J.T., 2008,

Using heat to characterize streambed water flux variability in four stream reaches: Journal of Environmental Quality, v. 37, no. 3, p. 1,010-1,023, doi:10.2134/jeq2006.0448.

Focazio, M.J., Kolpin, D.W., Barnes, K.K., Furlong, E.T., Meyer, M.T., Zaugg, S.D., Barber, L.B., and Thurman, E.M., 2008,

A national reconnaissance of pharmaceuticals and other organic wastewater contaminants in the United States--II. Untreated drinking water sources: Science of the Total Environment, v. 402, no. 2-3, p. 201-216, doi:10.1016/j.scitotenv.2008.02.021.

Furlong, E.T., Werner, S.L., Anderson, B.D., and Cahill, J.D., 2008,

Determination of human-health pharmaceuticals in filtered water by chemically modified styrene-divinylbenzene resin-based solid-phase extraction and high-performance liquid chromatography/mass spectrometry: U.S. Geological Survey Techniques and Methods book 5, sec. B, chap. B5, 56 p.

Gammons, C.H., Nimick, D.A., Parker, S.R., Snyder, D.M., McCleskey, R.B., Amils, R., and Poulson, S.R., 2008,

Photoreduction fuels biogeochemical cycling of iron in Spain's acid rivers: Chemical Geology, v. 252, no. 3-4, p. 202-213, doi:10.1016/j.chemgeo.2008.03.004.

Garcia, C.A., Johnson, M.J., Andraski, B.J., Halford, K.J., and Mayers, C.J., 2008,

Portable chamber measurements of evapotranspiration at the Amargosa Desert Research Site near Beatty, Nye County, Nevada, 2003-06: U.S. Geological Survey Scientific Investigations Report 2008-5135, 10 p (On-line only).

Gates, J.B., Böhlke, J.K., and Edmunds, W.M., 2008,

Ecohydrological factors affecting nitrate concentrations in a phreatic desert aquifer in northwest China: Environmental Science and Technology, v. 42, no. 10, p. 3,531-3,537, doi:10.1021/es702478d.

Gebrekristos, R.A., Shapiro, A.M., and Usher, B.H., 2008,

Estimation of the effective chemical diffusion coefficient of a rock matrix in a fractured aquifer: Hydrogeology Journal, v. 16, no. 4, p. 629-639, doi:10.1007/s10040-007-0255-0.

Glassmeyer, S., Kolpin, D.W., Furlong, E.T., and Focazio, M.T., 2008,

Environmental presence and persistence of pharmaceuticals--An overview, in Aga, D.S., ed., Fate of Pharmaceuticals in the Environment and in Water Treatment Systems: CRC Press, Taylor and Francis Books, p. 3-51, ISBN:9781420052329.

Gooseff, M.N., Bencala, K.E., and Wondzell, S.M., 2008,

Solute transport along stream and river networks (Chap. 18), in Rice, S.P., Roy, A.G., and Rhoads, B.L., eds., River Confluences, Tributaries and the Fluvial Network: Hoboken, N.J., John WIley and Sons, Ltd., p. 395-417, ISBN:978-0-470-02672-4.

Gorski, P.R., Armstrong, D.E., Hurley, J.P., and Krabbenhoft, D.P., 2008,

Influence of natural dissolved organic carbon on the bioavailability of mercury to a freshwater alga: Environmental Pollution, v. 154, no. 1, p. 116-123, doi:10.1016/j.envpol.2007.12.004.

Graham, J.L., Loftin, K.A., Ziegler, A.C., and Meyer, M.T., 2008,

Cyanobacteria in lakes and reserviors--Toxin and taste-and-odor sampling guidelines (ver. 1.0): U.S. Geological Survey Techniques of Water-Resources Investigations, book 9, chap. A7, section 7.5, 65 p (available online only).

Graham, J.L., Loftin, K.A., Ziegler, A.C., and Meyer, M.T., 2008,

Guidelines for design and sampling for cyanobacterial toxin and taste-and-odor studies in lakes and reservoirs: U.S. Geological Survey Scientific Investigations Report 2008-5038, 39 p.

Gray, J.E., Theodorakos, P.M., and Krabbenhoft, D.P., 2008,

Evaluation of mercury contamination at inactive mercury mines in and around Big Bend National Park, in Gray, J.E., and Page, W.R., eds., Geological, geochemical, and geophysical studies by the U. S. Geological Survey in Big Bend National Park, Texas: U.S. Geological Survey Circular 1327, p. 57-64.

Green, C.T., Fisher, L.H., and Bekins, B.A., 2008,

Nitrogen fluxes through unsaturated zones in five agricultural settings across the United States: Journal of Environmental Quality, v. 37, no. 3, p. 1,073-1,085, doi:10.2134/jeq2007.0010.

Green, C.T., Puckett, L.J., Böhlke, J.K., Bekins, B.A., Phillips, S.P., Kauffman, L.J., Denver, J.M., and Johnson, H.M., 2008,

Limited occurrence of denitrification in four shallow aquifers in agricultural areas of the United States: Journal of Environmental Quality, v. 37, no. 3, p. 994-1,009, doi:10.2134/jeq2006.0419.

Gurdak, J.J., Walvoord, M.A., and McMahon, P.B., 2008,

Susceptibility to enhanced chemical migration from depression-focused preferential flow, High Plains Aquifer: Vadose Zone Journal, v. 7, no. 4, p. 1,172-1,184, doi:10.2136/vzj2007.0145.

Haack, S.K., and Duris, J.W., 2008,

Chemical and microbiological water quality of subsurface agricultural drains during a field trial of liquid dairy manure effluent application rate and varying tillage practices, Upper Tiffin Watershed, southeastern Michigan: U.S. Geological Survey Open-File Report 2008-1189, 38 p.

Hall, B.D., Aiken, G.R., Krabbenhoft, D.P., Marvin-DiPasquale, M., and Swarzenski, C.M., 2008,

Wetlands as principal zones of methylmercury production in southern Louisiana and the Gulf of Mexico region: Environmental Pollution, v. 154, no. 1, p. 124-134, doi:10.1016/j.envpol.2007.12.017.

Hannon, J.E., Böhlke, J.K., and Mroczkowski, S.J., 2008,

Effects of nitrate and water on the oxygen isotopic analysis of barium sulfate precipitated from solution: Rapid Communications in Mass Spectrometry, v. 22, no. 24, p. 4,109-4,120, doi:10.1002/rcm.3832.

Harris, S.H., Smith, R.L., and Barker, C.E., 2008,

Microbial and chemical factors influencing methane production in laboratory incubations of low-rank subsurface coals: International Journal of Coal Geology, v. 76, no. 1-2, p. 46-51, doi:10.1016/j.coal.2008.05.019.

Harvey, R.W., Metge, D.W., Shapiro, A.M., Renken, R.A., Osborn, C.L., Ryan, J.N., Cunningham, K.J., and Landkamer, L., 2008,

Pathogen and chemical transport in the karst limestone of the Biscayne aquifer--3. Use of microspheres to estimate the transport potential of Cryptosporidium parvum oocysts: Water Resources Research, v. 44, W08431, doi:10.1029/2007WR006060.

Hinck, J., Blazer, V., Denslow, N., Echols, K., Gale, R., Wieser, C., May, T., Ellersieck, M., Coyle, J., and Tillitt, D., 2008,

Chemical contaminants, health indicators, and reproductive biomarker responses in fish from rivers in the Southeastern United States: Science of the Total Environment, v. 390, no. 2-3, p. 538-557, doi:10.1016/j.scitotenv.2007.10.026.

Hinckley, E.-L.S., Kendall, C., and Loague, K., 2008,

Not all water becomes wine--Sulfur inputs as an opportune tracer of hydrochemical losses from vineyards: Water Resources Research, v. 44, W00401, doi:10.1029/2007WR006672.

Hinkle, S.R., Böhlke, J.K., and Fisher, L.H., 2008,

Mass balance and isotope effects during nitrogen transport through septic tank systems with packed-bed (sand) filters: Science of the Total Environment, v. 407, no. 1, p. 324-332, doi:10.1016/j.scitotenv.2008.08.036.

Hladik, M.L., and Kuivila, K.M., 2008,

Analysis of chlorothalonil and three degradates in sediment and soil: Journal of Agricultural and Food Chemistry, v. 56, no. 7, p. 2310-2314, doi:10.1021/jf703695s.

Hladik, M.L., and Kuivila, K.M., 2008,

Occurrence of pyrethroids in bed and suspended sediments in California, in Gan, J.J., Spurlock, F., Hendley, P., and Weston, D., eds., Synthetic Pyrethroids--Occurrence and Behavior in Aquatic Environments: ACS Symposium Series 991, p. 55-71.

Hladik, M.L., Smalling, K.L., and Kuivila, K.M., 2008,

A multi-residue method for the analysis of pesticides and pesticide degradates in water using HLB solid-phase extraction and gas chromatography--ion trap mass spectrometry: Bulletin of Environmental Contamination and Toxicology, v. 80, no. 2, p. 139-144, doi:10.1007/s00128-007-9332-2.

Hostettler, F.D., Bekins, B.A., Rostad, C.E., and Herkelrath, W.N., 2008,

Response to commentary on Observed methanogenic biodegradation rrogressions: Environmental Forensics, v. 9, no. 2-3, p. 121-126, doi:10.1080/15275920802115738.

Izbicki, J.A., Ball, J.W., Bullen, T.D., and Sutley, S.J., 2008,

Chromium, chromium isotopes and selected trace elements, western Mojave Desert, USA: Applied Geochemistry, v. 23, no. 5, p. 1,325-1,352, doi:10.1016/j.apgeochem.2007.11.015.

Jones, N.L., Thompson, J.K., and Monismith, S.G., 2008,

A note on the effect of wind waves on vertical mixing in Franks Tract, Sacramento-San Joaquin Delta, California: San Francisco Estuary and Watershed Science, v. 6, no. 2, p. article 4.

Kent, D.B., Davis, J.A., Joye, J., and Curtis, G.P., 2008,

Influence of variable chemical conditions on EDTA-enhanced transport of metal ions in mildly acidic groundwater: Environmental Pollution, v. 153, no. 1, p. 44-52, doi:10.1016/j.envpol.2007.11.022.

Kimball, B.A., Runkel, R.L., and Walton-Day, K., 2008,

Principal locations of major-ion, trace-element, nitrate, and Escherichia coli loading to Emigration Creek, Salt Lake County, Utah, October 2005: U.S. Geological Survey Scientific Investigations Report 2008-5043, 33 p.

Kimmerer, W., Brown, L., Culberson, S., Moyle, P., Nobriga, M., and Thompson, J., 2008,

Aquatic ecosystems, in Healey, M.C., Dettinger, M.D., and Norgaard, R.B., eds., The State of Bay-Delta Science, 2008: Sacramento, Calif., CALFED Science Program, p. 73-102.

Kinney, C.A., Furlong, E.T., Kolpin, D.W., Burkhardt, M.R., Zaugg, S.D., Werner, S.L., Bossio, J.P., and Benotti, M.J., 2008,

Bioaccumulation of pharmaceuticals and other anthropogenic waste indicators in earthworms from agricultural soil amended with biosolid or swine manure: Environmental Science and Technology, v. 42, no. 6, p. 1863-1870, doi:10.1021/es702304c.

Kipp, K.L., Jr., Hsieh, P.A., and Charlton, S.R., 2008,

Guide to the revised ground-water flowand heat transport simulator--HYDROTHERM -- Version 3: U.S. Geological Survey Techniques and Methods 6-A25, 160 p (On-line only).

Kolker, A., Engle, M.A., Orem, W.H., Bunnell, J.E., Lerch, H.E., Krabbenhoft, D.P., Olson, M.L., and McCord, J.D., 2008,

Mercury, trace elements and organic constituents in atmospheric fine particulate matter, Shenandoah National Park, Virginia, USA--A combined approach to sampling and analysis: Geostandards and Geoanalytical Research, v. 32, no. 3, p. 279-293, doi:10.1111/j.1751-908X.2008.00913.x.

Kolpin, D.W., Battaglin, W.A., Conn, K.E., Furlong, E.T., Glassmeyer, S.T., Kalkhoff, S.J., Meyer, M.T., and Schnoebelen, D.J., 2008,

Occurrence of transformation products in the environment, in Boxall, A., ed., Degradation of Synthetic Chemicals in the Environment, The Handbook of Environmental Chemistry: Berlin, Springer-Verlag (Advanced Web release).

Konieczki, A.D., Brown, J.G., and Parker, J.T.C., 2008,

Hydrologic data from the study of acidic contamination in the Miami Wash--Pinal Creek Area, Arizona, water years 1997-2004: U.S. Geological Survey Open-File Report 2008-1273.

Kuivila, K.M., and Hladik, M.L., 2008,

Understanding the occurrence and transport of current-use pesticides in the San Francisco Estuary watershed: San Francisco Estuary and Watershed Science, v. 6, no. 3, Article 2.

Kulp, T.R., Hoeft, S.E., Asao, M., Madigan, M.T., Hollibaugh, J.T., Fisher, J.C., Stolz, J.F., Culbertson, C.W., Miller, L.G., and Oremland, R.S., 2008,

Arsenic(III) fuels anoxygenic photosynthesis in hot spring biofilms from Mono Lake, California: Science, v. 321, no. 5891, p. 967-970, doi:10.1126/science.1160799.

Laird, D.A., Chappell, M.A., Martens, D.A., Wershaw, R.L., and Thompson, M., 2008,

Distinguishing black carbon from biogenic humic substances in soil clay fractions: Geoderma, v. 143, no. 1-2, p. 115-122, doi:10.1016/j.geoderma.2007.10.025.

LeBlanc, D.R., Massey, A.J., Cochrane, J.J., King, J.H., and Smith, K.P., 2008,

Distribution and migration of ordnance-related compounds and oxygen and hydrogen stable isotopes in ground water near Snake Pond, Sandwich, Massachusetts, 2001-2006: U.S. Geological Survey Scientific Investigations Report 2008-5052, 19 p.

LeBlanc, D.R., and Vroblesky, D.A., 2008,

Comparison of pumped and diffusion sampling methods to monitor concentrations of perchlorate and explosive compounds in ground water, Camp Edwards, Cape Cod, Massachusetts, 2004-05: U.S. Geological Survey Scientific Investigations Report 2008-5159, 17 p.

Lee, C.J., Rasmussen, P.P., Ziegler, A.C., and Fuller, C.C., 2008,

Transport and sources of suspended sediment in the Mill Creek watershed, Johnson County, northeast Kansas, 2006-07: U.S. Geological Survey Scientific Investigations Report 2009-5001, 52 p.

Lee, K.E., Schoenfuss, H.L., Jahns, N.D., Brown, G.K., and Barber, L.B., 2008,

Alkylphenols, other endocrine-active chemicals, and fish responses in three streams in Minnesota--Study design and data, February-September 2007: U.S. Geological Survey Data Series 405, 44 p (plus appendixes).

Lee, K.E., Yaeger, C.S., Jahns, N.D., and Schoenfuss, H.L., 2008,

Occurrence of endocrine active compounds and biological responses in the Mississippi River--Study design and data, June through August 2006: U.S. Geological Survey Data Series 368, 27 p (plus appendix).

Leenheer, J.A., Izbicki, J.A., Rostad, C.E., Noyes, T.I., and Woodside, G., 2008,

Discovery of cyanuric acid during an assessment of natural organic matter in stormflow water of the Santa Ana River, southern California, 2003-2004: U.S. Geological Survey Scientific Investigations Report 2007-5048, 13 p.

Lev, S.M., Landa, E.R., Szlavecz, K., Casey, R., and Snodgrass, J., 2008,

Application of synchrotron methods to assess the uptake of roadway-derived Zn by earthworms in an urban soil: Mineralogical Magazine, v. 72, no. 1, p. 191-195, doi:10.1180/minmag.2008.072.1.191.

Loftin, K.A., Adams, C.D., and Meyer, M.T., 2008,

Effects of ionic strength, temperature, and pH on degradation of selected antibiotics: Journal of Environmental Quality, v. 37, no. 2, p. 378-386, doi:10.2134/jeq2007.0230.

Loftin, K.A., Meyer, M.T., Rubio, F., Kamp, L., Humphries, E., and Whereat, E., 2008,

Comparison of two cell lysis procedures for recovery of microcystins in water samples from Silver Lake in Dover, Delaware, with microcystin producing cyanobacterial accumulations: U.S. Geological Survey Open-File Report 2008-1341, 9 p.

Lorah, M.M., Majcher, E.H., Jones, E.J., and Voytek, M.A., 2008,

Microbial consortia development and microcosm and column experiments for enhanced bioremediation of chlorinated volatile organic compounds, West Branch Canal Creek wetland area, Aberdeen Proving Ground, Maryland: U.S. Geological Survey Scientific Investigations Report 2007-5165, 79 p.

Lorenzi, A.H., Cain, D.J., Parchaso, F., Thompson, J.K., Luoma, S.N., Hornberger, M.I., and Dyke, J.L., 2008,

Near-field receiving water monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California--2007: U.S. Geological Survey Open-File Report 2008-1180, 127 p.

Lucas, L.V., Koseff, J.R., Monismith, S.G., and Thompson, J.K., 2008,

Shallow water processes govern system-wide phytoplankton bloom dynamics--A modeling study: Journal of Marine Systems, v. 75, no. 1-2, p. 70-86 doi:10.1016/j.jmarsys.2008.07.011.

Lucius, J.E., Abraham, J.D., and Burton, B.L., 2008,

Resistivity profiling for mapping gravel layers that may control contaminant migration at the Amargosa Desert Research Site, Nevada: U.S. Geological Survey Scientific Investigations Report 2008-5091, 30 p (On-line only).

Luoma, S., Anderson, S., Bergamaschi, B., Holm, L., Ruhl, C., Schoellhamer, D., and Stewart, R., 2008,

Water quality, in Healey, M.C., Dettinger, M.D., and Norgaard, R.B., eds., The State of Bay-Delta Science, 2008: Sacramento, Calif., CALFED Science Program, p. 55-72.

Luoma, S., Healey, M., Culberson, S., Shlemon, R., and Roos, M., 2008,

Integration among issues of water and environmental management, in Healey, M.C., Dettinger, M.D., and Norgaard, R.B., eds., The State of Bay-Delta Science, 2008: Sacramento, Calif., CALFED Science Program, p. 139-154.

Lutz, M.A., Brigham, M.E., and Marvin-DiPasquale, M., 2008,

Procedures for collecting and processing streambed sediment and pore water for analysis of mercury as part of the National Water-Quality Assessment Program: U.S. Geological Survey Open-File Report 2008-1279.

Marvin-DiPasquale, M.C., Lutz, M.A., Krabbenhoft, D.P., Aiken, G.R., Orem, W.H., Hall, B.D., DeWild, J.F., and Brigham, M.E., 2008,

Total mercury, methylmercury, methylmercury production potential, and ancillary streambed-sediment and pore-water data for selected streams in Oregon, Wisconsin, and Florida, 2003-04: U.S. Geological Survey Data Series 375, 24 p.

Masoner, J.R., Stannard, D.I., and Christenson, S.C., 2008,

Differences in evaporation between a floating pan and class A pan on land: Journal of the American Water Works Association, v. 44, no. 3, p. 552-561, doi:10.1111/j.1752-1688.2008.00181.x.

McMahon, P.B., Burow, K.R., Kauffman, L.J., Eberts, S.M., Böhlke, J.K., and Gurdak, J.J., 2008,

Simulated response of water quality in public-supply wells to land-use change: Water Resources Research, v. 44, p. 1-16, W00A06, doi:10.1029/2007WR006731.

McMahon, P.B., and Chapelle, F.H., 2008,

Redox processes and water quality of selected principal aquifer systems: Ground Water, v. 46, no. 2, p. 259-271, doi:10.1111/j.1745-6584.2007.00385.x.

Metcalfe, C.D., Boxall, A., Fenner, K., Kolpin, D., Servos, M., Silberhorn, E., and Staveley, J., 2008,

Exposure assessment of veterinary medicines in aquatic systems, in Crane, M., Boxall, A.B.A., and Barrett, K., eds., Veterinary Medicines in the Environment: Boca Raton, Fla., CRC Press, p. 57-96, ISBN:978-1-880611-94-4.

Miller, L.G., and Oremland, R.S., 2008,

Electricity generation by anaerobic bacteria and anoxic sediments from hypersaline soda lakes: Extremophiles, v. 12, no. 6, p. 837-848, doi:10.1007/s00792-008-0191-5.

Nanus, L., Williams, M.W., Campbell, D.H., Elliott, E.M., and Kendall, C., 2008,

Evaluating regional patterns in nitrate sources to watersheds in National Parks of the Rocky Mountains using nitrate isotopes: Environmental Science and Technology, v. 42, no. 17, p. 6,487-6,493, doi:10.1021/es800739e.

Nelson, S.J., Johnson, K.B., Weathers, K.C., Loftin, C.S., Fernandez, I.J., Kahl, J.S., and Krabbenhoft, D.P., 2008,

A comparison of winter mercury accumulation at forested and no-canopy sites measured with different snow sampling techniques: Applied Geochemistry, v. 23, no. 3, p. 384-398, doi:10.1016/j.apgeochem.2007.12.009.

Neuzil, C.E., and Konikow, L.F., 2008,

Reply to comment by T. N. Narasimhan on “A method to estimate groundwater depletion from confining layers”: Water Resources Research, v. 44, W06421, doi:10.1029/2008WR007084.

Niswonger, R.G., Prudic, D.E., Fogg, G.E., Stonestrom, D.A., and Buckland, E.M., 2008,

Method for estimating spatially variable seepage loss and hydraulic conductivity in intermittent and ephemeral streams: Water Resources Research, v. 44, W05418, doi:10.1029/2007WR006626.

Nordstrom, D.K., 2008,

Questa baseline and pre-mining ground-water quality investigation---25--Summary of results and baseline and pre-mining ground-water geochemistry, Red River Valley, Taos County, New Mexico, 2001-2005: U.S. Geological Survey Professional Paper 1728, 111 p.

Nordstrom, D.K., 2008,

What was the groundwater quality before mining in a mineralized region? Lessons from the Questa Project: Journal of Geosciences, v. 12, no. 2, p. 139-149.

Oremland, R.S., and Voytek, M.A., 2008,

Acetylene as fast food--Implications for development of life on anoxic primordial Earth and in the outer solar system: Astrobiology, v. 8, no. 1, p. 1-14, doi:10.1089/ast.2007.0183.

Parker, S.R., Gammons, C.H., Pedrozo, F.L., and Wood, S.A., 2008,

Diel changes in metal concentrations in a geogenically acidic river--Rio Agrio, Argentina: Journal of Volcanology and Geothermal Research, v. 178, no. 2, p. 213-223, doi:10.1016/j.jvolgeores.2008.06.029.

Peterson, D.H., Stewart, I., and Murphy, F., 2008,

Principal hydrologic responses to climatic and geologic variability in the Sierra Nevada, California: San Francisco Estuary and Watershed Science, v. 6, no. 1, p. article 3.

Phillips, P.J., Stinson, B., Zaugg, S.D., Furlong, E.T., Kolpin, D.W., Esposito, K.M., Bodniewicz, B., Pape, R., and Anderson, J., 2008,

A multi-disciplinary approach to the removal of emerging contaminants in municipal wastewater treatment plans in New York State, 2003-2004: Clearwaters, v. 38, no. 3, p. 48-59.

Plummer, L.N., Busenberg, E., Eberts, S.M., Bexfield, L.M., Brown, C.J., Fahlquist, L.S., Katz, B.G., and Landon, M.K., 2008,

Low-level detections of halogenated volatile organic compounds in groundwater--Use in vulnerability assessments: Journal of Hydrologic Engineering, v. 13, no. 11, p. 1,049-1,068, doi:10.1061/(ASCE)1084-0699(2008)13:11(1049).

Puckett, L.J., Zamora, C., Essaid, H., Wilson, J.T., Johnson, H.M., Brayton, M.J., and Vogel, J.R., 2008,

Transport and fate of nitrate at the ground-water/surface-water interface: Journal of Environmental Quality, v. 37, no. 3, p. 1,034-1,050, doi:10.2134/jeq2006.0550.

Reddy, M.M., Reddy, M.B., Kipp, K.L., Burman, A., Schuster, P.F., and Rawlik, P.S., 2008,

Peat porewater chloride concentration profiles in the Everglades during wet/dry cycles from January 1996 to June 1998--Field measurements and theoretical analysis: Hydrologic Processes, v. 22, no. 11, p. 1,713-1,724, doi:10.1002/hyp.6739.

Renken, R.A., Cunningham, K.J., Shapiro, A.M., Harvey, R.W., Zygnerski, M.R., Metge, D.W., and Wacker, M.A., 2008,

Pathogen and chemical transport in the karst limestone of the Biscayne aquifer--1. Revised conceptualization of groundwater flow: Water Resources Research, v. 44, W08429, doi:10.1029/2007WR006058.

Rice, K.C., 2008,

Water-quality data at amphibian research sites in Maryland, Washington, D.C., and Virginia, 2005-2007: U.S. Geological Survey Open-File Report 2008-1204, 12 p.

Ripley, J., Iwanowicz, L., Blazer, V., and Foran, C., 2008,

Utilization of protein expression profiles as indicators of environmental impairment of smallmouth bass (Micropterus dolomieu) from the Shenandoah River, Virginia, USA: Environmental Toxicology and Chemistry, v. 27, no. 8, p. 1756-1767, doi:10.1897/07-588.1.

Rogers, A.K., 2008,

Field data validation of an algorithm for computing obsidian effective hydration temperature: Journal of Archaeological Science, v. 35, no. 2, p. 441-447, doi:10.1016/j.jas.2007.04.009.

Schoenfuss, H.L., Bartell, S.E., Bistodeau, T.B., Cediel, R.A., Grove, K.J., Zintek, L., Lee, K.E., and Barber, L.B., 2008,

Impairment of the reproductive potential of male fathead minnows by environmentally relevant exposures to 4-nonylphenol: Aquatic Toxicology, v. 86, no. 1, p. 91-98, doi:10.1016/j.aquatox.2007.10.004.

Schultz, M.M., and Furlong, E.T., 2008,

Trace analysis of antidepressant pharmaceuticals and their select degradates in aquatic matrixes by LC/ESI/MS/MS: Analytical Chemistry, v. 80, no. 5, p. 1756-1762, doi:10.1021/ac702154e.

Schuster, P., Shanley, J., Marvin-Dipasquale, M., Reddy, M., Aiken, G., Roth, D., Taylor, H., Krabbenhoft, D., and DeWild, J., 2008,

Mercury and organic carbon dynamics during runoff episodes from a northeastern USA watershed: Water, Air, and Soil Pollution, v. 187, no. 1, p. 89-108, doi:10.1007/s11270-007-9500-3.

Sebestyen, S.D., Boyer, E.W., Shanley, J.B., Kendall, C., Doctor, D.H., Aiken, G.R., and Ohte, N., 2008,

Sources, transformations, and hydrological processes that control stream nitrate and dissolved organic matter concentrations during snowmelt in an upland forest: Water Resources Research, v. 44, no. 12, p. 1-14, W12410, doi:10.1029/2008WR006983.

Shanley, J.B., Mast, A.M., Campbell, D.H., Aiken, G.R., Krabbenhoft, D.P., Hunt, R.J., Walker, J.F., Schuster, P.F., Chalmers, A., Aulenbach, B.T., Peters, N.E., Marvin-DiPasquale, M., Clow, D.W., and Shafer, M.M., 2008,

Comparison of total mercury and methylmercury cycling at five sites using the small watershed approach: Environmental Pollution, v. 154, no. 1, p. 143-154, doi:10.1016/j.envpol.2007.12.031.

Shapiro, A.M., Renken, R.A., Harvey, R.W., Zygnerski, M.R., and Metge, D.W., 2008,

Pathogen and chemical transport in the karst limestone of the Biscayne aquifer--2. Chemical retention from diffusion and slow advection: Water Resources Research, v. 44, W08430, doi:10.1029/2007WR006059.

Singha, K., Pidlisecky, A., Day-Lewis, F.D., and Gooseff, M.N., 2008,

Electrical characterization of non-Fickian transport in groundwater and hyporheic systems: Water Resources Research, v. 44, W00D07, doi:10.1029/2008WR007048.

Smalling, K.L., and Kuivila, K.M., 2008,

Multi-residue method for the analysis of 85 current-use and legacy pesticides in bed and suspended sediments: Journal of Chromatography A, v. 1210, no. 1, p. 8-18, doi:10.1016/j.chroma.2008.09.023.

Smetacek, V., and Cloern, J.E., 2008,

Oceans--On phytoplankton trends: Science, v. 319, no. 5868, p. 1346-1348, doi:10.1126/science.1151330.

Smith, R.L., and Yoshinari, T., 2008,

Occurrence and turnover of nitric oxide in a nitrogen-impacted sand and gravel aquifer: Environmental Science and Technology, v. 42, no. 22, p. 8,245-8,251, doi:10.1021/es801290v.

Stewart, A.R., Saiki, M.K., Kuwabara, J.S., Alpers, C.N., Marvin-DiPasquale, M., and Krabbenhoft, D.P., 2008,

Influence of plankton mercury dynamics and trophic pathways on mercury concentrations of top predator fish of a mining-impacted reservoir: Canadian Journal of Fisheries and Aquatic Sciences, v. 65, no. 11, p. 2,351-2,366.

Stollenwerk, K.G., Breit, G.N., Welch, A.H., Yount, J.C., Whitney, J.W., Foster, A.L., Uddin, M.N., Majumder, R.K., and Ahmed, N., 2008,

Erratum to "Arsenic attention by oxidized aquifer sediments in Bangladesh" [Science of the Total Environment 379 (2007) 133-150]: Science of the Total Environment, v. 389, no. 2-3, p. 567-568, doi:10.1016/j.scitotenv.2007.08.018.

Stubbins, A., Hubbard, V., Uher, G., Law, C.S., Upstill-Goddard, R.C., Aiken, G.R., and Mopper, K., 2008,

Relating carbon monoxide photoproduction to dissolved organic matter functionality: Environmental Science and Technology, v. 42, no. 9, p. 3271-3276, doi:10.1021/es703014q.

Swayze, G.A., Desborough, G.A., Smith, K.S., Heather A. Lowers, Hammarstrom, J.M., Diehl, S.F., Leinz, R.W., and Driscoll, R.L., 2008,

Understanding jarosite--From mine waste to Mars (Chapter B), in Verplanck, P.L., ed., Understanding Contaminants Associated with Mineral Deposits: U.S. Geological Survey Circular 2008-1328, p. 8-13.

Takesue, R.K., Bacon, C.R., and Thompson, J.K., 2008,

Influences of organic matter and calcification rate on trace elements in aragonitic estuarine bivalve shells: Geochimica et Cosmochimica Acta, v. 72, no. 22, p. 5,431-5,445, doi:10.1016/j.gca.2008.09.003.

Tertuliani, J.S., Alvarez, D.A., Furlong, E.T., Meyer, M.T., Zaugg, S.D., and Koltun, G.F., 2008,

Occurrence of organic wastewater compounds in the Tinkers Creek Watershed and two other tributaries to the Cuyahoga River, Northeast Ohio: U.S. Geological Survey Scientific Investigations Report 2008-5173, 60 p.

Tertuliani, J.S., Alvarez, D.S., Furlong, E.T., Meyer, M.T., Zaugg, S.D., and Koltun, G.F., 2008,

Occurrence of organic wastewater compounds in the Tinkers Creek watershed and two other tributaries to the Cuyahoga River, Northeast Ohio: U.S. Geological Survey Scientific Investigations Report 2008-5173, 60 p.

Thébault, J., Schraga, T.S., Cloern, J.E., and Dunleavy, E.G., 2008,

Primary production and carrying capacity of former salt ponds after reconnection to San Francisco Bay: Wetlands, v. 28, no. 3, p. 841-851, doi:10.1672/07-190.1.

Thompson, J.K., Koseff, J.R., Monismith, S.G., and Lucas, L.V., 2008,

Shallow water processes govern system-wide phytoplankton bloom dynamics--A field study: Journal of Marine Systems, v. 74, no. 1-2, p. 153-166, doi:10.1016/j.jmarsys.2007.12.006.

Thorn, K.A., Pennington, J.C., Kennedy, K.R., Cox, L.G., Hayes, C.A., and Porter, B.E., 2008,

N-15 NMR study of the immobilization of 2,4- and 2,6-dinitrotoluene in aerobic compost: Environmental Science and Technology, v. 42, no. 7, p. 2,542-2,550, doi:10.1021/es0720659.

Thurman, E.M., and Scribner, E.A., 2008,

A decade of measuring, monitoring, and studying the fate and transport of triazine herbicides in groundwater, surface water, reservoirs, and precipitation by the U.S. Geological Survey (Chapter 30), in LeBaron, H.M., McFarland, J., and Burnside, O., eds., The Triazine Herbicides: Amsterdam, The Netherlands, Elsevier Science, ISBN:978-0-444-51167-6.

Triska, F.J., Duff, J.H., A.P., J., and Avanzino, R.J., 2008,

Nutrient chemistry, transformation and release in riparian groundwater seep discharge during the final meter of subsurface transport, Minnesota, USA: Verhandlungen des Internationalen Verein Limnologie, v. 30, no. 3, p. 435-440.

Vajda, A.M., Barber, L.B., Gray, J.L., Lopez, E.M., Woodling, J.D., and Norris, D.O., 2008,

Reproductive disruption in fish downstream from an estrogenic wastewater effluent: Environmental Science and Technology, v. 42, no. 9, p. 3,407-3,414, doi:10.1021/es0720661.

Verplanck, P.L., Manning, A.H., Kimball, B.A., McCleskey, R.B., Runkel, R.L., Caine, J.S., Adams, M., Gemery-Hill, P.A., and Fey, D.L., 2008,

Ground- and surface-water chemistry of Handcart Gulch, Park County, Colorado, 2003-2006: U.S. Geological Survey Open-File Report 2007-1020, 31 p.

Verplanck, P.L., Mueller, S.H., Goldfarb, R.J., Nordstrom, D.K., and Youcha, E.K., 2008,

Geochemical controls of elevated arsenic concentrations in groundwater, Ester Dome, Fairbanks district, Alaska: Chemical Geology, v. 255, no. 1-2, p. 160-172, doi:10.1016/j.chemgeo.2008.06.020.

Verplanck, P.L., ed., 2008,

Understanding contaminants associated with mineral deposits: U.S. Geological Survey Circular 2008-1328, 96 p.

Walter, D.A., and LeBlanc, D.R., 2008,

Use of inverse modeling methods to improve ground-water-modeling calibration and evaluate model-prediction uncertainty, Camp Edwards, Cape Cod, Massachusetts: U.S. Geological Survey Scientific Investigations Report 2007-5257.

Walvoord, M.A., Andraski, B.J., Krabbenhoft, D.P., and Striegl, R.G., 2008,

Transport of elemental mercury in the unsaturated zone from a waste disposal site in an arid region: Applied Geochemistry, v. 23, no. 3, p. 572-583, doi:10.1016/j.apgeochem.2007.12.014.

Wang, M., Ford, R.M., and Harvey, R.W., 2008,

Coupled effect of chemotaxis and growth on microbial distributions in organic-amended aquifer sediments--Observations from laboratory and field studies: Environmental Science and Technology, v. 41, no. 10, p. 3,556-3,562, doi:10.1021/es702392h.

Weiss, J.V., and Cozzarelli, I.M., 2008,

Biodegradation in contaminated aquifers--Incorporating microbial/molecular methods: Ground Water, v. 46, no. 2, p. 305-322, doi:10.1111/j.1745-6584.2007.00409.x.

Welch, A.H., Stollenwerk, K.G., Paul, A.P., Maurer, D.K., and Halford, K.J., 2008,

In situ arsenic removal in an alkaline clastic aquifer: Applied Geochemistry, v. 23, no. 8, p. 2477-2495, doi:10.1016/j.apgeochem.2008.02.010.

Winter, T.C., Buso, D.C., Shattuck, P.C., Harte, P.T., Vroblesky, D.A., and Goode, D.J., 2008,

The effect of terrace geology on ground-water movement and on the interaction of ground water and surface water on a mountainside near Mirror Lake, New Hampshire, USA: Hydrological Processes, v. 22, no. 1, p. 21-32, doi:10.1002/hyp.6593.

Yin, J., Young, M.H., and Yu, Z., 2008,

Effects of paleoclimate and time-varying canopy structures on paleowater fluxes: Journal of Geophysical Research--Atmospheres, v. 113, D06103, doi:10.1029/2007JD009010.

There are 149 publications published in 2008 in the bibliography. The above list is sorted by author. The Toxics Bibliographic Data Base was last updated on 8/4/09.

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Bibliography of Publications in Year 2007